PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G161411_P01 | ||||||||
Common Name | Z174J15.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 140aa MW: 15122.5 Da PI: 6.1133 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 71.7 | 9.8e-23 | 48 | 105 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTE.EEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkv.veitYegeHnh 58 +Dgy+W+KYGqK +k+ + rsY+rC ++ C +kkkve +dp++ + ++Y g H+h GRMZM2G161411_P01 48 EDGYEWKKYGQKFIKNIQKIRSYFRCRHRLCGAKKKVEWHPRDPSAaLRVVYDGAHQH 105 7******************************************985278********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 16.765 | 42 | 108 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-20 | 45 | 106 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-23 | 45 | 106 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.9E-24 | 47 | 107 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-20 | 48 | 105 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MDDSSSQPAT IVSGGEERNQ RREEDDDEET AAAEAEAGNG SQLMVVPEDG YEWKKYGQKF 60 IKNIQKIRSY FRCRHRLCGA KKKVEWHPRD PSAALRVVYD GAHQHGAAPP AAPEQGGGGG 120 ASNRYELGAQ YFGAGPAGSG |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G161411 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G161411_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970633 | 4e-90 | EU970633.1 Zea mays clone 348246 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008644632.1 | 4e-85 | probable WRKY transcription factor 2 | ||||
TrEMBL | Q6JAE3 | 1e-98 | Q6JAE3_MAIZE; Putative DNA-binding protein | ||||
STRING | GRMZM2G161411_P01 | 2e-99 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10158 | 34 | 44 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47260.1 | 9e-12 | WRKY DNA-binding protein 23 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G161411_P01 |
Publications ? help Back to Top | |||
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