PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G160971_P01
Common NameEREB208, LOC100192050
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 299aa    MW: 31719 Da    PI: 4.5061
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G160971_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-1987138156
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                        ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAa+ ++ a+ +l+g+
  GRMZM2G160971_P01  87 TKFRGVRRRP-WGKFAAEIRDpW-----RgVRVWLGTFDTAEEAARVYDTAAIQLRGA 138
                        69********.**********88.....55*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.53E-2887144No hitNo description
PfamPF008474.3E-1287137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-2988145IPR001471AP2/ERF domain
SMARTSM003806.8E-3488151IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2188145IPR016177DNA-binding domain
PROSITE profilePS5103223.23588145IPR001471AP2/ERF domain
PRINTSPR003672.4E-1089100IPR001471AP2/ERF domain
PRINTSPR003672.4E-10111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSRPRTVRIF WDDPDLTDSS SEEEGCGTRR VGRMVRELPP MAGAAAAAPV PDQCNAGDGD  60
RGRRLGVAAP GACSGARRRL AKTGPSTKFR GVRRRPWGKF AAEIRDPWRG VRVWLGTFDT  120
AEEAARVYDT AAIQLRGANA TTNFSAAANS GSRAGQRDPA TPGYESGTES SPAASSPTSV  180
LRKVPSLSSL AEDDSCAAPC EPAAGCRSLA VLEEEELGQF VPFEDAPVYA TSGFWDFEPD  240
AGFLYAEPSS PEASWNAAAA AEPASSDDAP SWAASPVQEN DYFQGLRDLF PLNPLPAIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-21881521479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G160971
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G160971_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341100.0BT034110.1 Zea mays full-length cDNA clone ZM_BFc0028O19 mRNA, complete cds.
GenBankBT0343370.0BT034337.1 Zea mays full-length cDNA clone ZM_BFc0009P04 mRNA, complete cds.
GenBankBT0552410.0BT055241.2 Zea mays full-length cDNA clone ZM_BFc0029G06 mRNA, complete cds.
GenBankEU9575180.0EU957518.1 Zea mays clone 1596096 ap2 domain protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130945.10.0uncharacterized protein LOC100192050
TrEMBLB4FAH20.0B4FAH2_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G160971_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.18e-24cytokinin response factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]