PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G160730_P02
Common NameEREB55, LOC100856890, ZEAMMB73_475046
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family AP2
Protein Properties Length: 393aa    MW: 43352.4 Da    PI: 8.8629
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G160730_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-18112161155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  GRMZM2G160730_P02 112 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 161
                        78*******************......55************************998 PP
2AP243.11e-13204254155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+++GV+++k  g+W+A+I         +k+++lg ++t+ eAa+a+++a+ k +g
  GRMZM2G160730_P02 204 SRFRGVTQHK-CGKWEARIGQlM----GKKYVYLGLYDTETEAAQAYDKAAIKCYG 254
                        789*******.7******77733....25**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-10112161IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-16112170IPR016177DNA-binding domain
SMARTSM003801.3E-30113175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-17113169IPR001471AP2/ERF domain
PROSITE profilePS5103217.78113169IPR001471AP2/ERF domain
PfamPF008472.8E-9204254IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-17204263IPR016177DNA-binding domain
CDDcd000182.87E-25204264No hitNo description
PROSITE profilePS5103215.791205262IPR001471AP2/ERF domain
SMARTSM003803.1E-35205268IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-17205262IPR001471AP2/ERF domain
PRINTSPR003672.9E-6206217IPR001471AP2/ERF domain
PRINTSPR003672.9E-6244264IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MAATRRAFFH SAVDGIARAG PGEAELLPAP PQVGRPVEGA SSMVFGFPVP RPTMPDSRPA  60
AVTQQFFPPT TTAAQQATME EQCHVPAGSA AEQWVRSSAS RKSRRGPRSR SSQYRGVTFY  120
RRTGRWESHI WDCGKQVYLG GFDTAQAAAR AYDQAAIKFR GLNADINFTL DDYKDEMKKM  180
KDLSKEEFVL VLRRQGAGFV RGSSRFRGVT QHKCGKWEAR IGQLMGKKYV YLGLYDTETE  240
AAQAYDKAAI KCYGKEAVTN FDAQSYDKEL QSQPWDGELD LELGLGCASS DPSTVAVEAF  300
SPATSSSSRK QRTMTLTLGL PEEEEETGAG YPHSSSSRRP PAPAAGMFGR PADDHVHVAP  360
PSHRQWQQQG RHAAPDGTPL DRSYHHWSIR FDP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G160730
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G160730_P02
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0403460.0BT040346.1 Zea mays full-length cDNA clone ZM_BFc0084O08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241712.10.0glossy15
SwissprotA0A0N7KMH01e-125AP24_ORYSJ; APETALA2-like protein 4
TrEMBLB4FTA80.0B4FTA8_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G160730_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.25e-72AP2 family protein
Publications ? help Back to Top
  1. Moose SP,Sisco PH
    Glossy15 Controls the Epidermal Juvenile-to-Adult Phase Transition in Maize.
    Plant Cell, 1994. 6(10): p. 1343-1355
    [PMID:12244224]
  2. Lauter N,Kampani A,Carlson S,Goebel M,Moose SP
    microRNA172 down-regulates glossy15 to promote vegetative phase change in maize.
    Proc. Natl. Acad. Sci. U.S.A., 2005. 102(26): p. 9412-7
    [PMID:15958531]
  3. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  4. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]
  5. Moose SP,Sisco PH
    Glossy15, an APETALA2-like gene from maize that regulates leaf epidermal cell identity.
    Genes Dev., 1996. 10(23): p. 3018-27
    [PMID:8957002]