PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G160730_P01
Common NameLOC100856890, ZEAMMB73_475046
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family AP2
Protein Properties Length: 249aa    MW: 27613.2 Da    PI: 10.3129
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G160730_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-18112161155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  GRMZM2G160730_P01 112 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 161
                        78*******************......55************************998 PP
2AP232.71.9e-10204245146
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaa 46 
                        s+++GV+++k  g+W+A+I         +k+++lg ++t+ eAa+ a
  GRMZM2G160730_P01 204 SRFRGVTQHK-CGKWEARIGQlM----GKKYVYLGLYDTETEAAQHA 245
                        789*******.7******77733....25**********88**9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.81E-16112170IPR016177DNA-binding domain
PfamPF008471.5E-10112161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-18113169IPR001471AP2/ERF domain
SMARTSM003801.3E-30113175IPR001471AP2/ERF domain
PROSITE profilePS5103217.78113169IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-9204243IPR016177DNA-binding domain
CDDcd000184.66E-14204243No hitNo description
PfamPF008471.4E-6204245IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-7205243IPR001471AP2/ERF domain
PROSITE profilePS5103210.204205249IPR001471AP2/ERF domain
SMARTSM003801.1E-8205248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0020142anatomystem internode
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MAATRRAFFH SAVDGIARAG PGEAELLPAP PQVGRPVEGA SSMVFGFPVP RPTMPDSRPA  60
AVTQQFFPPT TTAAQQATME EQCHVPAGSA AEQWVRSSAS RKSRRGPRSR SSQYRGVTFY  120
RRTGRWESHI WDCGKQVYLG GFDTAQAAAR AYDQAAIKFR GLNADINFTL DDYKDEMKKM  180
KDLSKEEFVL VLRRQGAGFV RGSSRFRGVT QHKCGKWEAR IGQLMGKKYV YLGLYDTETE  240
AAQHANQGI
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G160730
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G160730_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9574690.0EU957469.1 Zea mays clone 1593578 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241712.11e-179glossy15
RefseqXP_008659046.11e-178glossy15 isoform X1
SwissprotA0A0N7KMH02e-92AP24_ORYSJ; APETALA2-like protein 4
TrEMBLB4FTA81e-177B4FTA8_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G160730_P021e-178(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.33e-57related to AP2.7
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]