PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G160687_P02
Common NameZm.134
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 269aa    MW: 30229.5 Da    PI: 9.3505
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G160687_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.81.9e-30958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  GRMZM2G160687_P02  9 KRIENNTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 58
                       79***********************************************8 PP

2K-box105.47.1e-35801756100
              K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                        g   le++ ++ +qqe+akL+++i++Lq+++Rhl+G+++++LslkeL+qLe++Lek+++kiR++K+ell ++i+++ k+e elq+++++Lr+
  GRMZM2G160687_P02  80 GPPlLEHNAQQFYQQESAKLRNQIQMLQNTNRHLVGDSVGNLSLKELKQLESRLEKGISKIRARKSELLAAEISYMAKRETELQNDHMTLRT 171
                        4556788899********************************************************************************** PP

              K-box  97 klee 100
                        k+ee
  GRMZM2G160687_P02 172 KIEE 175
                        **97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.585161IPR002100Transcription factor, MADS-box
CDDcd002651.04E-44273No hitNo description
SuperFamilySSF554551.83E-32275IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-32323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-323859IPR002100Transcription factor, MADS-box
PfamPF014862.8E-2585173IPR002487Transcription factor, K-box
PROSITE profilePS5129714.78689179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048283Biological Processindeterminate inflorescence morphogenesis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGRGRIEIKR IENNTSRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANN  60
SVKATIERYK KAHTVGSSSG PPLLEHNAQQ FYQQESAKLR NQIQMLQNTN RHLVGDSVGN  120
LSLKELKQLE SRLEKGISKI RARKSELLAA EISYMAKRET ELQNDHMTLR TKIEEGEQQL  180
QQVTVARSVA AAAAAATNLE LNPFLEMDTK CFFTGGPFAT LDMKCFLPGS LQQMLEAQQR  240
QMLATELNLG YQLAPPGSDA ADNNPHHQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-20169169Myocyte-specific enhancer factor 2B
1tqe_Q6e-20169169Myocyte-specific enhancer factor 2B
1tqe_R6e-20169169Myocyte-specific enhancer factor 2B
1tqe_S6e-20169169Myocyte-specific enhancer factor 2B
5f28_A8e-20169169MEF2C
5f28_B8e-20169169MEF2C
5f28_C8e-20169169MEF2C
5f28_D8e-20169169MEF2C
6c9l_A6e-20169169Myocyte-specific enhancer factor 2B
6c9l_B6e-20169169Myocyte-specific enhancer factor 2B
6c9l_C6e-20169169Myocyte-specific enhancer factor 2B
6c9l_D6e-20169169Myocyte-specific enhancer factor 2B
6c9l_E6e-20169169Myocyte-specific enhancer factor 2B
6c9l_F6e-20169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1340.0ear| endosperm| ovary| pedicel| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G160687
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during ovule development. First detected in the ovule primordia and later in the inner and outer integuments, nucellus tissue and the inner layer of the carpel wall. {ECO:0000269|PubMed:10528264}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G160687_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0366950.0BT036695.1 Zea mays full-length cDNA clone ZM_BFb0132D15 mRNA, complete cds.
GenBankBT0625370.0BT062537.1 Zea mays full-length cDNA clone ZM_BFb0311H16 mRNA, complete cds.
GenBankBT0844370.0BT084437.1 Zea mays full-length cDNA clone ZM_BFb0113P24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001292923.10.0Zea AGAMOUS homolog2 isoform 1
RefseqXP_008673430.10.0zea AGAMOUS homolog2 isoform X1
RefseqXP_020405641.10.0zea AGAMOUS homolog2 isoform X1
SwissprotQ2QW531e-120MAD13_ORYSJ; MADS-box transcription factor 13
TrEMBLB4FHV70.0B4FHV7_MAIZE; Agamous-like MADS-box protein AGL11
STRINGGRMZM2G160687_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.19e-86MIKC_MADS family protein
Publications ? help Back to Top
  1. Gindullis F,Rose A,Patel S,Meier I
    Four signature motifs define the first class of structurally related large coiled-coil proteins in plants.
    BMC Genomics, 2002. 3: p. 9
    [PMID:11972898]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Yamaki S,Satoh H,Nagato Y
    Gypsy embryo specifies ovule curvature by regulating ovule/integument development in rice.
    Planta, 2005. 222(3): p. 408-17
    [PMID:16001259]
  4. Dreni L, et al.
    The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice.
    Plant J., 2007. 52(4): p. 690-9
    [PMID:17877710]
  5. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  6. Yamaki S,Nagato Y,Kurata N,Nonomura K
    Ovule is a lateral organ finally differentiated from the terminating floral meristem in rice.
    Dev. Biol., 2011. 351(1): p. 208-16
    [PMID:21146515]
  7. Li H,Liang W,Yin C,Zhu L,Zhang D
    Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy.
    Plant Physiol., 2011. 156(1): p. 263-74
    [PMID:21444646]
  8. Li H, et al.
    Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
    Plant Cell, 2011. 23(7): p. 2536-52
    [PMID:21784949]
  9. Theissen G,Strater T,Fischer A,Saedler H
    Structural characterization, chromosomal localization and phylogenetic evaluation of two pairs of AGAMOUS-like MADS-box genes from maize.
    Gene, 1995. 156(2): p. 155-66
    [PMID:7758952]
  10. Schmidt RJ, et al.
    Identification and molecular characterization of ZAG1, the maize homolog of the Arabidopsis floral homeotic gene AGAMOUS.
    Plant Cell, 1993. 5(7): p. 729-37
    [PMID:8103379]