PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G160224_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 48aa MW: 5705.67 Da PI: 11.1588 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.5 | 4.1e-12 | 2 | 47 | 42 | 85 |
TS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 42 sgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkld 85 +grsW+v l+ +++ ++ GW +F+ +n+L++gD++ F+++ GRMZM2G160224_P01 2 RGRSWTVSLKR--GKRLlgdrSAFKYGWHKFCVDNNLEVGDVCFFRVI 47 69*******54..333233448899********************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-14 | 1 | 47 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.38 | 1 | 48 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.28E-12 | 2 | 47 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.7E-9 | 2 | 47 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.88E-8 | 3 | 45 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 48 aa Download sequence Send to blast |
MRGRSWTVSL KRGKRLLGDR SAFKYGWHKF CVDNNLEVGD VCFFRVIR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G160224 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G160224_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796563.1 | 2e-21 | B3 domain-containing protein Os03g0212300-like | ||||
Refseq | XP_025796564.1 | 2e-21 | B3 domain-containing protein Os03g0212300-like | ||||
Swissprot | Q10Q26 | 2e-17 | Y3123_ORYSJ; B3 domain-containing protein Os03g0212300 | ||||
TrEMBL | A0A0A9SID0 | 2e-20 | A0A0A9SID0_ARUDO; Uncharacterized protein | ||||
TrEMBL | A0A1E5W8P6 | 2e-20 | A0A1E5W8P6_9POAL; B3 domain-containing protein | ||||
STRING | GRMZM2G160224_P01 | 1e-27 | (Zea mays) |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G160224_P01 |
Publications ? help Back to Top | |||
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