PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G160136_P02 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 251aa MW: 27594.5 Da PI: 9.7397 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 70.4 | 2.9e-22 | 133 | 195 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkre+rkq+NRe+ArrsR+RK+ae+eeL++ v++L aeN++L++e+ +l++ ++kl+ e+ GRMZM2G160136_P02 133 ERELKREKRKQSNRESARRSRLRKQAETEELATQVESLAAENTSLRSEIGRLTESSEKLRLEN 195 89*********************************************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.3E-18 | 128 | 192 | No hit | No description |
SMART | SM00338 | 4.9E-22 | 133 | 197 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.6E-21 | 133 | 195 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.185 | 135 | 198 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.63E-11 | 136 | 192 | No hit | No description |
CDD | cd14702 | 2.30E-19 | 138 | 186 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 140 | 155 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MGSFGLIATL HVATAMLWLD VELSILYLHV LQRDVYGPSK YTRLLQATKY TLREEGITVC 60 CILFLHDKCR HAPNHTLGNA TILPQHCFSA PVIKPSATNV ANSRAIGTTL SPPPGVMVPV 120 HNAVPSDLSV KDERELKREK RKQSNRESAR RSRLRKQAET EELATQVESL AAENTSLRSE 180 IGRLTESSEK LRLENSALMV KLKDTAEPSP SKAAASPSSP RASAENFLSM IDSANAPSVS 240 RHTEHVGPRL R |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 155 | RRSRLRK |
2 | 149 | 156 | RRSRLRKQ |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G160136 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G160136_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033625 | 0.0 | BT033625.1 Zea mays full-length cDNA clone ZM_BFc0117G20 mRNA, complete cds. | |||
GenBank | BT062412 | 0.0 | BT062412.1 Zea mays full-length cDNA clone ZM_BFb0293N02 mRNA, complete cds. | |||
GenBank | BT062784 | 0.0 | BT062784.1 Zea mays full-length cDNA clone ZM_BFb0346H09 mRNA, complete cds. | |||
GenBank | JX469957 | 0.0 | JX469957.1 Zea mays subsp. mays clone UT3219 bZIP-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001130428.1 | 1e-109 | G-box binding factor 1 | ||||
Refseq | XP_008648295.1 | 1e-109 | G-box binding factor 1 isoform X1 | ||||
Refseq | XP_008648296.1 | 1e-109 | G-box binding factor 1 isoform X1 | ||||
Refseq | XP_023156092.1 | 1e-109 | G-box binding factor 1 isoform X1 | ||||
TrEMBL | A0A1D6MR32 | 1e-124 | A0A1D6MR32_MAIZE; G-box-binding factor 3 | ||||
TrEMBL | A0A3L6FUX3 | 1e-124 | A0A3L6FUX3_MAIZE; Transcriptional activator TAF-1 | ||||
STRING | GRMZM2G160136_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2776 | 38 | 88 | Representative plant | OGRP4346 | 11 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01120.1 | 4e-22 | G-box binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G160136_P02 |