PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G160136_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 170aa MW: 18960 Da PI: 9.7674 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.5 | 4.3e-11 | 133 | 157 | 1 | 25 |
XXXXCHHHCHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKk 25 e+elkre+rkq+NRe+ArrsR+RK+ GRMZM2G160136_P01 133 ERELKREKRKQSNRESARRSRLRKQ 157 89**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.5E-8 | 128 | 157 | No hit | No description |
Pfam | PF00170 | 7.2E-9 | 133 | 159 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 1.14E-10 | 138 | 157 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 140 | 155 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MGSFGLIATL HVATAMLWLD VELSILYLHV LQRDVYGPSK YTRLLQATKY TLREEGITVC 60 CILFLHDKCR HAPNHTLGNA TILPQHCFSA PVIKPSATNV ANSRAIGTTL SPPPGVMVPV 120 HNAVPSDLSV KDERELKREK RKQSNRESAR RSRLRKQVCC VIQLYNEAAS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 155 | RRSRLRK |
2 | 149 | 156 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.263 | 1e-138 | endosperm| meristem| ovary| root| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G160136 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G160136_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033625 | 1e-140 | BT033625.1 Zea mays full-length cDNA clone ZM_BFc0117G20 mRNA, complete cds. | |||
GenBank | BT062412 | 1e-140 | BT062412.1 Zea mays full-length cDNA clone ZM_BFb0293N02 mRNA, complete cds. | |||
GenBank | BT062784 | 1e-140 | BT062784.1 Zea mays full-length cDNA clone ZM_BFb0346H09 mRNA, complete cds. | |||
GenBank | JX469957 | 1e-140 | JX469957.1 Zea mays subsp. mays clone UT3219 bZIP-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001130428.1 | 3e-53 | G-box binding factor 1 | ||||
Refseq | XP_008648295.1 | 3e-53 | G-box binding factor 1 isoform X1 | ||||
Refseq | XP_008648296.1 | 3e-53 | G-box binding factor 1 isoform X1 | ||||
Refseq | XP_023156092.1 | 3e-53 | G-box binding factor 1 isoform X1 | ||||
TrEMBL | A0A1D6MDA6 | 2e-65 | A0A1D6MDA6_MAIZE; G-box binding factor | ||||
STRING | GRMZM2G160136_P02 | 1e-114 | (Zea mays) |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G160136_P01 |