PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G159500_P02
Common NameLOC100281341, ZEAMMB73_447298, Zm.80974
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 348aa    MW: 38431.4 Da    PI: 5.9744
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G159500_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.64e-56221491129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdee++++yL++k+ ++++    vi evd++k+ePwdLp ++k +ekewyfF+++d+ky+tg+r+nrat++gyWkatgkdke+
  GRMZM2G159500_P02  22 LPPGFRFHPTDEEIISHYLAHKALNHRFVS-GVIGEVDLNKCEPWDLPGRAKMGEKEWYFFCHKDRKYPTGTRTNRATETGYWKATGKDKEI 112
                        79*************************888.99***************99999*************************************** PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        ++ +g lvg+kktLvfy+grap+gekt Wvmhe+rle
  GRMZM2G159500_P02 113 FRGRGVLVGMKKTLVFYRGRAPRGEKTGWVMHEFRLE 149
                        **********************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6415172IPR003441NAC domain
PROSITE profilePS5100559.24322172IPR003441NAC domain
PfamPF023651.9E-2823148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSEVSVINQA EVEDAGAGQL DLPPGFRFHP TDEEIISHYL AHKALNHRFV SGVIGEVDLN  60
KCEPWDLPGR AKMGEKEWYF FCHKDRKYPT GTRTNRATET GYWKATGKDK EIFRGRGVLV  120
GMKKTLVFYR GRAPRGEKTG WVMHEFRLEG KLPERLPRSA KDEWAVCKVF NKELAARTEP  180
IMAAAGAGEL ERVGSLGFLS ELLDSAELPA LIGADVDEVI DFNGPASTSG APGTSHSHLP  240
VKMEEHALLH MQYQPPPPPT SYYSSQYFSL PAMNSGDVLP PAIRRYCKAE QQVVSGQTAA  300
SEVSPSRETG LSADPNAEIS SAVTPSSSHQ FLPEFDDPVL NLADLWKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-541917717173NAC domain-containing protein 19
3swm_B2e-541917717173NAC domain-containing protein 19
3swm_C2e-541917717173NAC domain-containing protein 19
3swm_D2e-541917717173NAC domain-containing protein 19
3swp_A2e-541917717173NAC domain-containing protein 19
3swp_B2e-541917717173NAC domain-containing protein 19
3swp_C2e-541917717173NAC domain-containing protein 19
3swp_D2e-541917717173NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.809740.0pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G159500
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G159500_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9563950.0EU956395.1 Zea mays clone 1562064 GRAB2 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147731.10.0uncharacterized protein LOC100281341
TrEMBLB6SUI00.0B6SUI0_MAIZE; GRAB2 protein
STRINGGRMZM2G159500_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.17e-96Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]