PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G159500_P02 | ||||||||
Common Name | LOC100281341, ZEAMMB73_447298, Zm.80974 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 348aa MW: 38431.4 Da PI: 5.9744 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.6 | 4e-56 | 22 | 149 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdee++++yL++k+ ++++ vi evd++k+ePwdLp ++k +ekewyfF+++d+ky+tg+r+nrat++gyWkatgkdke+ GRMZM2G159500_P02 22 LPPGFRFHPTDEEIISHYLAHKALNHRFVS-GVIGEVDLNKCEPWDLPGRAKMGEKEWYFFCHKDRKYPTGTRTNRATETGYWKATGKDKEI 112 79*************************888.99***************99999*************************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ +g lvg+kktLvfy+grap+gekt Wvmhe+rle GRMZM2G159500_P02 113 FRGRGVLVGMKKTLVFYRGRAPRGEKTGWVMHEFRLE 149 **********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-64 | 15 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.243 | 22 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-28 | 23 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MSEVSVINQA EVEDAGAGQL DLPPGFRFHP TDEEIISHYL AHKALNHRFV SGVIGEVDLN 60 KCEPWDLPGR AKMGEKEWYF FCHKDRKYPT GTRTNRATET GYWKATGKDK EIFRGRGVLV 120 GMKKTLVFYR GRAPRGEKTG WVMHEFRLEG KLPERLPRSA KDEWAVCKVF NKELAARTEP 180 IMAAAGAGEL ERVGSLGFLS ELLDSAELPA LIGADVDEVI DFNGPASTSG APGTSHSHLP 240 VKMEEHALLH MQYQPPPPPT SYYSSQYFSL PAMNSGDVLP PAIRRYCKAE QQVVSGQTAA 300 SEVSPSRETG LSADPNAEIS SAVTPSSSHQ FLPEFDDPVL NLADLWKY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-54 | 19 | 177 | 17 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-54 | 19 | 177 | 17 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-54 | 19 | 177 | 17 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-54 | 19 | 177 | 17 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-54 | 19 | 177 | 17 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-54 | 19 | 177 | 17 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-54 | 19 | 177 | 17 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-54 | 19 | 177 | 17 | 173 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.80974 | 0.0 | pericarp |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G159500 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00518 | DAP | Transfer from AT5G18270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G159500_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956395 | 0.0 | EU956395.1 Zea mays clone 1562064 GRAB2 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147731.1 | 0.0 | uncharacterized protein LOC100281341 | ||||
TrEMBL | B6SUI0 | 0.0 | B6SUI0_MAIZE; GRAB2 protein | ||||
STRING | GRMZM2G159500_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1862 | 38 | 104 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.1 | 7e-96 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G159500_P02 |
Entrez Gene | 100281341 |
Publications ? help Back to Top | |||
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