PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G159475_P02 | ||||||||
Common Name | GRAS50 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GRAS | ||||||||
Protein Properties | Length: 197aa MW: 22947.2 Da PI: 6.1229 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 169.7 | 2.3e-52 | 2 | 188 | 187 | 373 |
GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 e++++e+L+++p+E+l+Vn+ +q ++l+desv +es+rd vL+ +++++P+ ++++ + + +++ F++rf eal +ysalfd+l+a+ pr+ GRMZM2G159475_P02 2 ESIRVEDLNLDPEEVLIVNCLYQFKNLMDESVVIESPRDIVLNNIRNMRPHTFIHAIVNGSFSAPFFVTRFREALFFYSALFDALDATTPRD 93 7899**************************************************************************************** PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 s++r+ +E+ l+gr++ nv+aceg++r+er et+++W+ r ++aG+k+ pl+ ++++ ++ ++ ++ + + ++ ++ +l++gWk+r L++v GRMZM2G159475_P02 94 SNQRMLIEENLFGRAALNVIACEGTDRVERPETYKQWQVRNQRAGLKQQPLNPDVVQVVRNKVKDCYHKDFVIDVDHRWLLQGWKGRILYAV 185 *******************************************************************889********************** PP GRAS 371 SaW 373 S W GRMZM2G159475_P02 186 STW 188 *** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 27.953 | 1 | 169 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.0E-50 | 2 | 188 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MESIRVEDLN LDPEEVLIVN CLYQFKNLMD ESVVIESPRD IVLNNIRNMR PHTFIHAIVN 60 GSFSAPFFVT RFREALFFYS ALFDALDATT PRDSNQRMLI EENLFGRAAL NVIACEGTDR 120 VERPETYKQW QVRNQRAGLK QQPLNPDVVQ VVRNKVKDCY HKDFVIDVDH RWLLQGWKGR 180 ILYAVSTWVA NDAPSYI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 3e-16 | 8 | 153 | 234 | 381 | Protein SHORT-ROOT |
5b3h_E | 3e-16 | 8 | 153 | 234 | 381 | Protein SHORT-ROOT |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.4391 | 0.0 | ear| endosperm| meristem| ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G159475 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G159475_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035641 | 0.0 | BT035641.1 Zea mays full-length cDNA clone ZM_BFb0073P23 mRNA, complete cds. | |||
GenBank | BT036617 | 0.0 | BT036617.1 Zea mays full-length cDNA clone ZM_BFb0126F15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020405892.1 | 1e-142 | scarecrow-like protein 34 | ||||
Swissprot | P0C884 | 2e-75 | SCL34_ARATH; Scarecrow-like protein 34 | ||||
TrEMBL | A0A3L6FMI6 | 1e-141 | A0A3L6FMI6_MAIZE; Scarecrow-like protein 9 | ||||
TrEMBL | B4FEV3 | 1e-145 | B4FEV3_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G159475_P01 | 1e-141 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29065.1 | 7e-78 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G159475_P02 |