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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G159475_P01 |
Common Name | gpm542a |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
GRAS |
Protein Properties |
Length: 710aa MW: 78391.5 Da PI: 5.1754 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G159475_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 359.5 | 4.8e-110 | 330 | 701 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
l++lL++cA+av+s+d + a++lL++++++asp gd++qRla++f+e+L+arla+++s +y++l +++ts ++ l+a++l+ + + k
GRMZM2G159475_P01 330 LRTLLTHCAQAVASDDRRSATELLKQIKQHASPLGDATQRLAHCFAEGLQARLAGTGSMVYQSLMAKRTS---ATDILQAYQLYMAAICFKK 418
6789************************************************************999998...99***************** PP
GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
+ l N++I++a g++++Hi+D++i++G+QWp++l+ +a+R++gpp++RiTg++ p++g ++++eetg+rL+k+A+++gvpf++++++
GRMZM2G159475_P01 419 VVCLFSNHTIYNAGLGKKKIHIVDYGIQYGFQWPCFLRWIADREGGPPEVRITGIDLPQPGfrPTQRIEETGRRLSKYAQQFGVPFKYQAIA 510
************************************************************9******************************* PP
GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
a+++e++++e+L+++p+E+l+Vn+ +q ++l+desv +es+rd vL+ +++++P+ ++++ + + +++ F++rf eal +ysalfd+l+a+
GRMZM2G159475_P01 511 ASKMESIRVEDLNLDPEEVLIVNCLYQFKNLMDESVVIESPRDIVLNNIRNMRPHTFIHAIVNGSFSAPFFVTRFREALFFYSALFDALDAT 602
******************************************************************************************** PP
GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
pr+s++r+ +E+ l+gr++ nv+aceg++r+er et+++W+ r ++aG+k+ pl+ ++++ ++ ++ ++ + + ++ ++ +l++gWk+r
GRMZM2G159475_P01 603 TPRDSNQRMLIEENLFGRAALNVIACEGTDRVERPETYKQWQVRNQRAGLKQQPLNPDVVQVVRNKVKDCYHKDFVIDVDHRWLLQGWKGRI 694
***********************************************************************889****************** PP
GRAS 367 LvsvSaW 373
L++vS W
GRMZM2G159475_P01 695 LYAVSTW 701
******* PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 710 aa
Download sequence Send
to blast |
MGSSCDPSPS PGADDLFLSL SDLGPTSPSA YLDLPPTPQP QQGIKGPTQD LLLPYISSML 60 MEDDIDDTFF YDYPDNPALL QAQQSFLDVL SDDATVPTTT TTHSSASVNH HHSSSSSDAS 120 ASGPLTPAAV DSYAPAPAAQ FDSFDFDPAA FFSNGANSDL MTSAFLKGME EANKFLPTQD 180 KLVIDLDPPD DPKRFVLPTP AADKLAPGLN AAAPTVHVAV AVKEEEAILA APDAAPGSGG 240 AVLGRGRRNR FDDEEDLELQ RRSSKQSALE GDGDERDVFE KYIIASPEMC TEQMQKLRIA 300 MQEAAAKREA AAGENGKAKG RRGGREVVDL RTLLTHCAQA VASDDRRSAT ELLKQIKQHA 360 SPLGDATQRL AHCFAEGLQA RLAGTGSMVY QSLMAKRTSA TDILQAYQLY MAAICFKKVV 420 CLFSNHTIYN AGLGKKKIHI VDYGIQYGFQ WPCFLRWIAD REGGPPEVRI TGIDLPQPGF 480 RPTQRIEETG RRLSKYAQQF GVPFKYQAIA ASKMESIRVE DLNLDPEEVL IVNCLYQFKN 540 LMDESVVIES PRDIVLNNIR NMRPHTFIHA IVNGSFSAPF FVTRFREALF FYSALFDALD 600 ATTPRDSNQR MLIEENLFGR AALNVIACEG TDRVERPETY KQWQVRNQRA GLKQQPLNPD 660 VVQVVRNKVK DCYHKDFVID VDHRWLLQGW KGRILYAVST WVANDAPSYI
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727758 | 0.0 | KJ727758.1 Zea mays clone pUT5702 GRAS transcription factor (GRAS50) mRNA, partial cds. |