PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G159456_P01 | ||||||||
Common Name | bHLH84, LOC100283388 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 86aa MW: 9690.97 Da PI: 9.3331 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.1 | 1.5e-08 | 12 | 53 | 14 | 54 |
HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54 d+iN+ +++L+ llP++s + ++ + s + L++++ YIksL GRMZM2G159456_P01 12 DEINELISKLQALLPESSrRRNASRSSASKLLKETCAYIKSL 53 68**************6647777889***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.832 | 1 | 53 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-9 | 12 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-8 | 12 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.2E-6 | 12 | 53 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MSSGRRGRIS DDEINELISK LQALLPESSR RRNASRSSAS KLLKETCAYI KSLHREVDDL 60 SERLSGLMST MDNDSPQAEI IRSLLR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.9708 | 1e-146 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G159456 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}. | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G159456_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063907 | 1e-144 | BT063907.2 Zea mays full-length cDNA clone ZM_BFc0119B05 mRNA, complete cds. | |||
GenBank | EU964585 | 1e-144 | EU964585.1 Zea mays clone 280170 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001149761.1 | 9e-54 | uncharacterized protein LOC100283388 | ||||
Refseq | XP_002468422.1 | 9e-54 | transcription factor ILI3 | ||||
Refseq | XP_008677317.1 | 9e-54 | DNA binding protein isoform X1 | ||||
Refseq | XP_021318617.1 | 9e-54 | transcription factor ILI3 | ||||
Swissprot | A2XD15 | 1e-34 | ILI3_ORYSI; Transcription factor ILI3 | ||||
Swissprot | Q10R47 | 1e-34 | ILI3_ORYSJ; Transcription factor ILI3 | ||||
TrEMBL | A0A317Y6E1 | 2e-52 | A0A317Y6E1_MAIZE; Transcription factor ILI3 | ||||
TrEMBL | B6THX0 | 2e-52 | B6THX0_MAIZE; BHLH transcription factor | ||||
TrEMBL | C5WVX8 | 2e-52 | C5WVX8_SORBI; Uncharacterized protein | ||||
STRING | Sb01g045690.1 | 3e-53 | (Sorghum bicolor) | ||||
STRING | GRMZM2G159456_P01 | 3e-53 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP928 | 38 | 145 | Representative plant | OGRP19538 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28857.1 | 2e-24 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G159456_P01 |
Entrez Gene | 100283388 |
Publications ? help Back to Top | |||
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