PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G159431_P01
Common NameLOC100284049, PCO127444
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 310aa    MW: 34336.8 Da    PI: 6.0511
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G159431_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78e-082602932154
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        k +yp+++++++L +++gL+ +q+ +WF N+R +
  GRMZM2G159431_P01 260 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 293
                        469*****************************87 PP

2ELK231.9e-08214235122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK +L++++++++ ++++E++
  GRMZM2G159431_P01 214 ELKMELKQGFKSRIEDVREEIL 235
                        9*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.0E-164892IPR005540KNOX1
PfamPF037901.6E-145090IPR005540KNOX1
SMARTSM012561.7E-23103158IPR005541KNOX2
PfamPF037914.1E-18106157IPR005541KNOX2
PROSITE profilePS512139.289214234IPR005539ELK domain
PROSITE profilePS5007111.742234297IPR001356Homeobox domain
SMARTSM003891.7E-10236301IPR001356Homeobox domain
SuperFamilySSF466893.59E-16236300IPR009057Homeodomain-like
CDDcd000864.92E-12237298No hitNo description
Gene3DG3DSA:1.10.10.603.9E-25241300IPR009057Homeodomain-like
PfamPF059207.6E-18254293IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MQRGGDQAGA SLGMEMGVGY AGGGGGGECS SSSAAAAAAA AAEGEERQLL KGEIAVHPLC  60
EQLVAAHVGC LRVATPIDHL PLIDAQLAQS SGLLHSYAAH HRPFLSPHDK HDLDSFLAQY  120
LMLLCSFREQ LQQHVRVHAV EAVMACREIE QSLQDLTGAT LEEGTGATMS EDEDEAPMLE  180
VGLDMGSDGH DMMGFGPLMP TDSERSLMER VRQELKMELK QGFKSRIEDV REEILRKRRA  240
GKLPGDTTSI LKQWWQEHSK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHNNSQ  300
TSTLKSKRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290309RKRNWHNNSQTSTLKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.949220.0aerial organ| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G159431
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo at 3 days after pollination (DAP). {ECO:0000269|PubMed:10095070}.
UniprotTISSUE SPECIFICITY: Isoform 1 is expressed in roots and flowers, and at lower levels in leaf blades and leaf sheaths. Isoform 2 is expressed in roots and flowers. {ECO:0000269|PubMed:12034492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G159431_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9669070.0EU966907.1 Zea mays clone 298091 homeobox protein HD1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150419.10.0homeobox protein HD1
SwissprotQ94LW30.0KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLB6TPJ20.0B6TPJ2_MAIZE; Homeobox protein HD1
STRINGGRMZM2G159431_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-139KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]