PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G159431_P01 | ||||||||
Common Name | LOC100284049, PCO127444 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TALE | ||||||||
Protein Properties | Length: 310aa MW: 34336.8 Da PI: 6.0511 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.7 | 8e-08 | 260 | 293 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + GRMZM2G159431_P01 260 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 293 469*****************************87 PP | |||||||
2 | ELK | 23 | 1.9e-08 | 214 | 235 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ GRMZM2G159431_P01 214 ELKMELKQGFKSRIEDVREEIL 235 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.0E-16 | 48 | 92 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.6E-14 | 50 | 90 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.7E-23 | 103 | 158 | IPR005541 | KNOX2 |
Pfam | PF03791 | 4.1E-18 | 106 | 157 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.289 | 214 | 234 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.742 | 234 | 297 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-10 | 236 | 301 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.59E-16 | 236 | 300 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.92E-12 | 237 | 298 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-25 | 241 | 300 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.6E-18 | 254 | 293 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MQRGGDQAGA SLGMEMGVGY AGGGGGGECS SSSAAAAAAA AAEGEERQLL KGEIAVHPLC 60 EQLVAAHVGC LRVATPIDHL PLIDAQLAQS SGLLHSYAAH HRPFLSPHDK HDLDSFLAQY 120 LMLLCSFREQ LQQHVRVHAV EAVMACREIE QSLQDLTGAT LEEGTGATMS EDEDEAPMLE 180 VGLDMGSDGH DMMGFGPLMP TDSERSLMER VRQELKMELK QGFKSRIEDV REEILRKRRA 240 GKLPGDTTSI LKQWWQEHSK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHNNSQ 300 TSTLKSKRKR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 290 | 309 | RKRNWHNNSQTSTLKSKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.94922 | 0.0 | aerial organ| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G159431 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in embryo at 3 days after pollination (DAP). {ECO:0000269|PubMed:10095070}. | |||||
Uniprot | TISSUE SPECIFICITY: Isoform 1 is expressed in roots and flowers, and at lower levels in leaf blades and leaf sheaths. Isoform 2 is expressed in roots and flowers. {ECO:0000269|PubMed:12034492}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G159431_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU966907 | 0.0 | EU966907.1 Zea mays clone 298091 homeobox protein HD1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001150419.1 | 0.0 | homeobox protein HD1 | ||||
Swissprot | Q94LW3 | 0.0 | KNOS3_ORYSJ; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | B6TPJ2 | 0.0 | B6TPJ2_MAIZE; Homeobox protein HD1 | ||||
STRING | GRMZM2G159431_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 | Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-139 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G159431_P01 |
Entrez Gene | 100284049 |
Publications ? help Back to Top | |||
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