PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G159399_P02
Common NameLOC100272511
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 373aa    MW: 41017 Da    PI: 8.1598
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G159399_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.84.9e-24118219199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++i+r++++r++lt+GW+ Fv++++L +gD++vF   
  GRMZM2G159399_P02 118 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGEVWKFRHIFRGTPRRHLLTTGWSAFVNQKKLVAGDSIVFL-- 205
                        89****************************996555555..8999*********************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        +++ +el+v+++r+
  GRMZM2G159399_P02 206 RTEHGELCVGIRRA 219
                        55999*******97 PP

2Auxin_resp118.65e-39274357183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                        aa+ a+++++FevvY+Prast+eFvvk+++v++a+++++++GmRfkmafetedss++++ +Gt+++ + +d++rWpnS+Wr+L+
  GRMZM2G159399_P02 274 AASLAASGQPFEVVYYPRASTPEFVVKAASVQNAMRNQWCPGMRFKMAFETEDSSRISWfMGTIASAQVADTIRWPNSPWRLLQ 357
                        688999****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.8E-37109221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-28113222IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-22117218No hitNo description
PROSITE profilePS5086312.844118220IPR003340B3 DNA binding domain
SMARTSM010192.1E-21118220IPR003340B3 DNA binding domain
PfamPF023625.6E-22118219IPR003340B3 DNA binding domain
PfamPF065074.5E-34274357IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MKEAGEERCL DPQLWHACAG GMVQMPPVRS RVYYFPQGHA EHAHGGGGAT DLAGARARPL  60
PPLVLCTVAG VRFLADPETD EVFAKIRLVP AAPGEVEFGE PREFGIDPED AREKLSSFAK  120
TLTQSDANNG GGFSVPRYCA ETIFPKLDYR ADPPVQTVLA KDVHGEVWKF RHIFRGTPRR  180
HLLTTGWSAF VNQKKLVAGD SIVFLRTEHG ELCVGIRRAK RVSCGGMECI SGWNAPVYGA  240
LSAFLKDEEG KITKGPGGYM RGRGKVEITD VVEAASLAAS GQPFEVVYYP RASTPEFVVK  300
AASVQNAMRN QWCPGMRFKM AFETEDSSRI SWFMGTIASA QVADTIRWPN SPWRLLQVLL  360
HPMFPIPICH TSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-731035851368Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.834140.0endosperm| meristem| ovary| root| sheath| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G159399
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G159399_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0388670.0BT038867.1 Zea mays full-length cDNA clone ZM_BFb0336O01 mRNA, complete cds.
GenBankHM0045320.0HM004532.1 Zea mays auxin response factor 17 (ARF17) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001335723.10.0uncharacterized protein LOC100272511
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLB4FP290.0B4FP29_MAIZE; Auxin response factor
STRINGGRMZM2G159399_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-156auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]