PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G159399_P02 | ||||||||
Common Name | LOC100272511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ARF | ||||||||
Protein Properties | Length: 373aa MW: 41017 Da PI: 8.1598 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.8 | 4.9e-24 | 118 | 219 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++i+r++++r++lt+GW+ Fv++++L +gD++vF GRMZM2G159399_P02 118 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGEVWKFRHIFRGTPRRHLLTTGWSAFVNQKKLVAGDSIVFL-- 205 89****************************996555555..8999*********************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 +++ +el+v+++r+ GRMZM2G159399_P02 206 RTEHGELCVGIRRA 219 55999*******97 PP | |||||||
2 | Auxin_resp | 118.6 | 5e-39 | 274 | 357 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eFvvk+++v++a+++++++GmRfkmafetedss++++ +Gt+++ + +d++rWpnS+Wr+L+ GRMZM2G159399_P02 274 AASLAASGQPFEVVYYPRASTPEFVVKAASVQNAMRNQWCPGMRFKMAFETEDSSRISWfMGTIASAQVADTIRWPNSPWRLLQ 357 688999****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.8E-37 | 109 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.12E-28 | 113 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.12E-22 | 117 | 218 | No hit | No description |
PROSITE profile | PS50863 | 12.844 | 118 | 220 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-21 | 118 | 220 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.6E-22 | 118 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.5E-34 | 274 | 357 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MKEAGEERCL DPQLWHACAG GMVQMPPVRS RVYYFPQGHA EHAHGGGGAT DLAGARARPL 60 PPLVLCTVAG VRFLADPETD EVFAKIRLVP AAPGEVEFGE PREFGIDPED AREKLSSFAK 120 TLTQSDANNG GGFSVPRYCA ETIFPKLDYR ADPPVQTVLA KDVHGEVWKF RHIFRGTPRR 180 HLLTTGWSAF VNQKKLVAGD SIVFLRTEHG ELCVGIRRAK RVSCGGMECI SGWNAPVYGA 240 LSAFLKDEEG KITKGPGGYM RGRGKVEITD VVEAASLAAS GQPFEVVYYP RASTPEFVVK 300 AASVQNAMRN QWCPGMRFKM AFETEDSSRI SWFMGTIASA QVADTIRWPN SPWRLLQVLL 360 HPMFPIPICH TSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-73 | 10 | 358 | 51 | 368 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.83414 | 0.0 | endosperm| meristem| ovary| root| sheath| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G159399 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G159399_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038867 | 0.0 | BT038867.1 Zea mays full-length cDNA clone ZM_BFb0336O01 mRNA, complete cds. | |||
GenBank | HM004532 | 0.0 | HM004532.1 Zea mays auxin response factor 17 (ARF17) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001335723.1 | 0.0 | uncharacterized protein LOC100272511 | ||||
Swissprot | Q9AV47 | 0.0 | ARFV_ORYSJ; Auxin response factor 22 | ||||
TrEMBL | B4FP29 | 0.0 | B4FP29_MAIZE; Auxin response factor | ||||
STRING | GRMZM2G159399_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 1e-156 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G159399_P02 |
Entrez Gene | 100272511 |
Publications ? help Back to Top | |||
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