PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G159399_P01
Common NameARF17, LOC100272511
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 644aa    MW: 70964 Da    PI: 6.9677
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G159399_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.2e-23118219199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++i+r++++r++lt+GW+ Fv++++L +gD++vF   
  GRMZM2G159399_P01 118 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGEVWKFRHIFRGTPRRHLLTTGWSAFVNQKKLVAGDSIVFL-- 205
                        89****************************996555555..8999*********************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        +++ +el+v+++r+
  GRMZM2G159399_P01 206 RTEHGELCVGIRRA 219
                        55999*******97 PP
2Auxin_resp117.41.2e-38274357183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                        aa+ a+++++FevvY+Prast+eFvvk+++v++a+++++++GmRfkmafetedss++++ +Gt+++ + +d++rWpnS+Wr+L+
  GRMZM2G159399_P01 274 AASLAASGQPFEVVYYPRASTPEFVVKAASVQNAMRNQWCPGMRFKMAFETEDSSRISWfMGTIASAQVADTIRWPNSPWRLLQ 357
                        688999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-36110221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-28113222IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-21117218No hitNo description
PROSITE profilePS5086312.844118220IPR003340B3 DNA binding domain
SMARTSM010192.1E-21118220IPR003340B3 DNA binding domain
PfamPF023621.4E-21118219IPR003340B3 DNA binding domain
PfamPF065071.1E-33274357IPR010525Auxin response factor
PROSITE profilePS5174519.489549635IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MKEAGEERCL DPQLWHACAG GMVQMPPVRS RVYYFPQGHA EHAHGGGGAT DLAGARARPL  60
PPLVLCTVAG VRFLADPETD EVFAKIRLVP AAPGEVEFGE PREFGIDPED AREKLSSFAK  120
TLTQSDANNG GGFSVPRYCA ETIFPKLDYR ADPPVQTVLA KDVHGEVWKF RHIFRGTPRR  180
HLLTTGWSAF VNQKKLVAGD SIVFLRTEHG ELCVGIRRAK RVSCGGMECI SGWNAPVYGA  240
LSAFLKDEEG KITKGPGGYM RGRGKVEITD VVEAASLAAS GQPFEVVYYP RASTPEFVVK  300
AASVQNAMRN QWCPGMRFKM AFETEDSSRI SWFMGTIASA QVADTIRWPN SPWRLLQVSW  360
DEPDLLQNVK CVNPWLVEIV SSIPPIHLGT FSPPRKKLRV AQHPDFPFEG QLLNPIFHGN  420
PLGPSNSPLR CFSDIAPAGI QGARHAQFGL PLTDYQLNQL HLGFNRLGAM TPTPRISKGF  480
VISSAPASES VSCLLTIGTP QATEKSDDIK RPHIMLFGKP ILTEQQMDSG GSREGLSQDR  540
KASELGLEDG HCKVFMESED VGRTIDLSVF GSYEELYGQL ADMFGIEKAE IMRHLCYRDA  600
AGAVRHTGEE PFNDFMKVAR RLTIIEGTEG RPQKPLVEYM VERA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-771038251392Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.834140.0endosperm| meristem| ovary| root| sheath| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G159399
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G159399_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0663470.0BT066347.1 Zea mays full-length cDNA clone ZM_BFb0348D12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001335723.10.0uncharacterized protein LOC100272511
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLD9HNU40.0D9HNU4_MAIZE; Auxin response factor
STRINGGRMZM2G159399_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]