PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G159134_P02 | ||||||||
Common Name | LOC100501609 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 333aa MW: 36247.5 Da PI: 7.2606 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 51.4 | 2.3e-16 | 263 | 311 | 5 | 54 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eNk+L +l+el++ GRMZM2G159134_P02 263 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENKKLT-TLKELEN 311 79*************************************998.8888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.2E-11 | 259 | 327 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.128 | 261 | 303 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.7E-13 | 263 | 307 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 1.82E-21 | 263 | 309 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.3E-14 | 263 | 311 | No hit | No description |
SuperFamily | SSF57959 | 3.81E-11 | 263 | 305 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 266 | 281 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MGSQTIASQA GGGGRGMGSS GGAGAAQRGQ MQSLARQGSL YNLTLDEVQS HLGEPLHSMN 60 LEELLKSVFP DDLDPDGGTT SQYEQSSGLL RQGSITMPPE LSRRTVDEVW KDIQDAPNRN 120 VGESGRRKRE RQPTLGEMTL EDFLVKAGVV AEGYLKDLNG IGSVEQVGST GAAGLTAGAQ 180 WLDHYQQRIT AIEPHQHRQH SLPGAYIPGQ LSLQSLNVGP SAILESYSDG HISSPMMGAL 240 SDSPMPGRKR GSPGDVADKL VERRQKRMIK NRESAARSRA RKQAYTNELE NKVSRLEEEN 300 KKLTTLKELE NILFSEPLPE PKYQLRRTGS ATF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 131 | GRRKRERQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.86558 | 0.0 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G159134 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}. | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00409 | DAP | Transfer from AT3G56850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G159134_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT085758 | 0.0 | BT085758.1 Zea mays full-length cDNA clone ZM_BFc0058B21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001183222.1 | 0.0 | uncharacterized LOC100501609 | ||||
Swissprot | Q9LES3 | 1e-80 | AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
TrEMBL | C4J4L1 | 0.0 | C4J4L1_MAIZE; ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
STRING | GRMZM2G159134_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2707 | 38 | 83 | Representative plant | OGRP540 | 15 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56850.1 | 9e-72 | ABA-responsive element binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G159134_P02 |
Entrez Gene | 100501609 |
Publications ? help Back to Top | |||
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