PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G159119_P01
Common NameLOC100216751, ZEAMMB73_380796
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 459aa    MW: 49339 Da    PI: 7.061
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G159119_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1017.9e-32277332156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k+r++W+peLH+rF++a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  GRMZM2G159119_P01 277 KARRCWAPELHRRFLQALQQLGGSHVATPKQIRELMNVDGLTNDEVKSHLQKYRLH 332
                        68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.015274334IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-28275335IPR009057Homeodomain-like
SuperFamilySSF466895.44E-17275335IPR009057Homeodomain-like
TIGRFAMsTIGR015577.4E-27277332IPR006447Myb domain, plants
PfamPF002499.7E-7279330IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MEMDPPPPPP LHADRRRRFR DYLLALEEER RKIQVFQREL PLCLDLVTQT IEGMRSHMDS  60
VVVGSEETVS DHGGPVLEEF MPLKPTTLSS SSSQPHYQDE HDSAHYLEHR RGSAATANDV  120
VDADKDGEAV GDLETAAASS SRPLPHPETK KAMPDWLQSV QLWSNQQQPS ASPPQHQDEL  180
LLPCRPVALN ACRKPGGAFQ PFEKEKKKKD KEEKQRAELE LPLPAAASSA VVGDSCDRAG  240
ATDTDTDTAE NNKASSNKGG NDKEAQLSSQ SQAPSRKARR CWAPELHRRF LQALQQLGGS  300
HVATPKQIRE LMNVDGLTND EVKSHLQKYR LHTRRPNSAA AAVQSGGTSV VAPPAAPQFV  360
VVGGIWVPPP EYAAAVAVAA AAAAQPQQVH LAGDASGTTT TAADKVYAPV ATTLTPAPRP  420
RPRPRPERQS SSCSGARRSG DACSGSPAVL SSSSHTASA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-13277330255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-13277330255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-13277330154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-13277330154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-13277330154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-13277330154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-13277330255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-13277330255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-13277330255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-13277330255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-13277330255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-13277330255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11318DRRRRF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.798660.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G159119
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G159119_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate. {ECO:0000269|PubMed:23324170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0372900.0BT037290.1 Zea mays full-length cDNA clone ZM_BFb0161K16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001136626.10.0uncharacterized protein LOC100216751
SwissprotQ6Z8691e-112NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBLK7TM840.0K7TM84_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G159119_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64703754
Representative plantOGRP54151221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.14e-61G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sawaki N, et al.
    A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice.
    Plant Cell Physiol., 2013. 54(4): p. 506-17
    [PMID:23324170]