PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G159032_P01
Common Namehdt103
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 300aa    MW: 32501.4 Da    PI: 4.4423
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G159032_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00021275297223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +C+ C+ksF +   L+ H +  H
  GRMZM2G159032_P01 275 PCKSCSKSFISETALQAHSKAkH 297
                        6*****************88767 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.032274300IPR007087Zinc finger, C2H2
PROSITE patternPS000280276297IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEFWGLEVKP GSTVKCEPGY GFVLHLSQAA LGESKKSDNA LMYVKIDDQK LAIGTLSVDK  60
NPHIQFDLIF DKEFELSHTS KTTSVFFTGY KVEQPFEEDE MDLDSEDEDE ELNVPVVKEN  120
GKADEKKQKS QEKAVAAPSK SSPDSKKSKD DDDSDEDETD DSDEDETDDS DEGLSPEEGD  180
DDSSDEDDTS DDEEEDTPTP KKPEVGKKRA AESSVLKTPL SDKKAKVATP SSQKTGGKKG  240
AAVHVATPHP AKGKTIVNND KSVKSPKSAP KSGVPCKSCS KSFISETALQ AHSKAKHGGK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.8560.0aerial organ| cell culture| ear| embryo| endosperm| meristem| ovary| pollen| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G159032
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G159032_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9530710.0EU953071.1 Zea mays clone 1380088 histone deacetylase 2b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105402.20.0histone deacetylase HDT1
SwissprotQ9M4U40.0HDT3_MAIZE; Histone deacetylase HDT3
TrEMBLA0A3L6E5250.0A0A3L6E525_MAIZE; Type I inositol polyphosphate 5-phosphatase 1
TrEMBLB6SK060.0B6SK06_MAIZE; Histone deacetylase 2b
STRINGGRMZM2G159032_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Representative plantOGRP10531129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.26e-27histone deacetylase 3
Publications ? help Back to Top
  1. K
    Different types of maize histone deacetylases are distinguished by a highly complex substrate and site specificity.
    Biochemistry, 1999. 38(21): p. 6769-73
    [PMID:10346897]
  2. Dangl M,Brosch G,Haas H,Loidl P,Lusser A
    Comparative analysis of HD2 type histone deacetylases in higher plants.
    Planta, 2001. 213(2): p. 280-5
    [PMID:11469594]
  3. Mai A, et al.
    3-(4-Aroyl-1-methyl-1H-2-pyrrolyl)-N-hydroxy-2-propenamides as a new class of synthetic histone deacetylase inhibitors. 2. Effect of pyrrole-C2 and/or -C4 substitutions on biological activity.
    J. Med. Chem., 2004. 47(5): p. 1098-109
    [PMID:14971890]
  4. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  5. Brosch G,Lusser A,Goralik-Schramel M,Loidl P
    Purification and characterization of a high molecular weight histone deacetylase complex (HD2) of maize embryos.
    Biochemistry, 1996. 35(49): p. 15907-14
    [PMID:8961957]
  6. Lusser A,Brosch G,Loidl A,Haas H,Loidl P
    Identification of maize histone deacetylase HD2 as an acidic nucleolar phosphoprotein.
    Science, 1997. 277(5322): p. 88-91
    [PMID:9204905]