PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G158700_P01
Common NameZm.13888
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 303aa    MW: 33333.7 Da    PI: 6.2818
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G158700_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-173178148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT +Ed ll+  v+ +G g+W+  ar  g++Rt+k+c++rw++yl
  GRMZM2G158700_P01 31 RGPWTVDEDALLAAHVAAHGEGRWNELARDAGLRRTGKSCRLRWLNYL 78
                       89********************************************97 PP
2Myb_DNA-binding50.83.8e-1684127146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg +T+ E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  GRMZM2G158700_P01  84 RGGFTPREQLLILDLHSRWGNR-WSKIAAHLP-GRTDNEVKNYWRT 127
                        788*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.9182682IPR017930Myb domain
SuperFamilySSF466892.51E-3029125IPR009057Homeodomain-like
SMARTSM007172.0E-143080IPR001005SANT/Myb domain
PfamPF002492.2E-153178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-203285IPR009057Homeodomain-like
CDDcd001674.66E-53378No hitNo description
PROSITE profilePS5129417.0883133IPR017930Myb domain
SMARTSM007172.7E-1483131IPR001005SANT/Myb domain
PfamPF002497.9E-1584127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2386132IPR009057Homeodomain-like
CDDcd001672.77E-1187127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDALWNGSSC DWPAPTVIIS DDDAAAAELR RGPWTVDEDA LLAAHVAAHG EGRWNELARD  60
AGLRRTGKSC RLRWLNYLRP GVRRGGFTPR EQLLILDLHS RWGNRWSKIA AHLPGRTDNE  120
VKNYWRTRVQ KHAKQLHCDV GSRRFHDAMR NLWMPRLIER IHADDSAAVA ANATGDVSHF  180
YSASPSHELS SSSQPAPAYR NAAPNGSCAR APSPDASCVT GPSSWSREAS PASQFQSSGS  240
TIAGPSTSTE LCQNGCSSAT SVDMFDESWS ELLARANHDD TDFGLGETGD NWWGLEDIWE  300
QPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-242813124126MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G158700
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G158700_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9733870.0EU973387.1 Zea mays clone 397963 cpm7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152038.10.0uncharacterized protein LOC100285675
SwissprotQ2QZJ85e-80JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A3L6FHT30.0A0A3L6FHT3_MAIZE; Transcription factor MYB62
TrEMBLB6U8220.0B6U822_MAIZE; Cpm7
STRINGGRMZM2G158700_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Representative plantOGRP1422434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.13e-73myb domain protein 112
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  3. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  4. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  5. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  6. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]