PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G158313_P01 | ||||||||
Common Name | Zm.18102 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 252aa MW: 26983.2 Da PI: 5.9639 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30 | 1.1e-09 | 118 | 159 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 kr +r NR +A+rsR RK+++i eLe+ v L+ e +aL GRMZM2G158313_P01 118 PKRVKRILANRQSAQRSRVRKLQYISELERSVTGLQMEVSAL 159 5999****************************9998887665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.3E-13 | 115 | 179 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.461 | 117 | 173 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.9E-11 | 119 | 173 | No hit | No description |
Pfam | PF00170 | 1.8E-9 | 119 | 168 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.2E-13 | 119 | 173 | No hit | No description |
CDD | cd14703 | 2.67E-22 | 120 | 170 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 122 | 137 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MAQLPPRAPG GAAPQDHWSA AGEFLGFAAA RRGAHRRSAS DSAAFLEALP MEDVIGGDGF 60 DRLDDDQLMS MFSDVDAPAV SAGDAAQLMD VADADADADD DGSAASSRAA ADGVAADPKR 120 VKRILANRQS AQRSRVRKLQ YISELERSVT GLQMEVSALS PRVAFLDHQR SLLTVGNSHL 180 KQRIAALAQD KIFKDAHQEA LKKEIERLRH VYQQQQQQQQ IKVATTGGAD IAAAASMQAR 240 QELLACEGAA IR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.18102 | 0.0 | ovary| pollen |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G158313 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and shoots. {ECO:0000269|PubMed:18065552}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G158313_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By white light. {ECO:0000269|PubMed:18065552}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968745 | 0.0 | EU968745.1 Zea mays clone 323889 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001337114.1 | 1e-178 | uncharacterized protein LOC100281364 | ||||
Swissprot | Q6K3R9 | 1e-96 | BZP19_ORYSJ; Basic leucine zipper 19 | ||||
TrEMBL | A0A1D6H5N5 | 1e-177 | A0A1D6H5N5_MAIZE; Basic leucine zipper 34 | ||||
STRING | GRMZM2G158313_P01 | 1e-178 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1322 | 38 | 125 | Representative plant | OGRP126 | 17 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58120.1 | 1e-51 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G158313_P01 |