PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G158204_P01
Common NameZEAMMB73_580255
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 313aa    MW: 34826.7 Da    PI: 9.8449
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G158204_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.53.7e-214112036114
                NAM  36 evdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrap 114
                        +v++yk++P++Lp+  ++++++++w+fFs+ d+ky++g+ ++r+t +gyWkatgkd  ++  + ++vg +ktLv+++gra+
  GRMZM2G158204_P01  41 DVEVYKSHPSHLPErsALQTGDRQWFFFSRMDRKYPNGSLASRTTGDGYWKATGKDCFICG-GVRAVGNRKTLVYHHGRAR 120
                        689*********94357888999************************************99.999***********99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.2991149IPR003441NAC domain
SuperFamilySSF1019415.49E-2339120IPR003441NAC domain
PfamPF023651.5E-648118IPR003441NAC domain
PfamPF015543.3E-18135260IPR002528Multi antimicrobial extrusion protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006855Biological Processdrug transmembrane transport
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0015238Molecular Functiondrug transmembrane transporter activity
GO:0015297Molecular Functionantiporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MRAHGRPVSH PQLTLLVRLH TAARRPLRAL HALSRFRHEF DVEVYKSHPS HLPERSALQT  60
GDRQWFFFSR MDRKYPNGSL ASRTTGDGYW KATGKDCFIC GGVRAVGNRK TLVYHHGRAR  120
LEFWCFPLVG VPSQNTEAIS YMITYGFAAV ISTRVSNELG ARNIANAKKA LTVSLALSLM  180
LGVAFLLLLG LGHDLLVRLF TTSEVVVSAF ASMTPLLIGS VVLDSTQGVL CGVARGCGWQ  240
HLVAWTNLVA FYVIGLPLAI LFGFTLGFQT KGLWMGQICG LLCQNCVLFF ITLRTNWQEL  300
DLTMFNKDND FVC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yck_A5e-29135299280444multi drug efflux transporter
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.987710.0aerial organ| ear| endosperm| meristem| pericarp| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G158204
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the root epidermis and cortex. Not expressed in hypocotyl. Detected in the elongation zone of young roots, but not in the meristematic region. {ECO:0000269|PubMed:11449055}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for protection of the roots from inhibitory compounds. When expressed in a heterologous system, confers resistance to tetramethylammonium chloride. {ECO:0000269|PubMed:11449055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G158204_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0559870.0BT055987.1 Zea mays full-length cDNA clone ZM_BFc0100E23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955314.11e-110protein DETOXIFICATION 18
SwissprotQ9LUH22e-51DTX19_ARATH; Protein DETOXIFICATION 19
TrEMBLA0A1D6FIC21e-117A0A1D6FIC2_MAIZE; Putative MATE efflux family protein
TrEMBLA0A3L6DSF31e-117A0A3L6DSF3_MAIZE; Protein DETOXIFICATION 19
STRINGGRMZM2G158204_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.13e-24NAC domain containing protein 16
Publications ? help Back to Top
  1. Diener AC,Gaxiola RA,Fink GR
    Arabidopsis ALF5, a multidrug efflux transporter gene family member, confers resistance to toxins.
    Plant Cell, 2001. 13(7): p. 1625-38
    [PMID:11449055]
  2. Li L,He Z,Pandey GK,Tsuchiya T,Luan S
    Functional cloning and characterization of a plant efflux carrier for multidrug and heavy metal detoxification.
    J. Biol. Chem., 2002. 277(7): p. 5360-8
    [PMID:11739388]
  3. Hvorup RN, et al.
    The multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) exporter superfamily.
    Eur. J. Biochem., 2003. 270(5): p. 799-813
    [PMID:12603313]
  4. Marinova K, et al.
    The Arabidopsis MATE transporter TT12 acts as a vacuolar flavonoid/H+ -antiporter active in proanthocyanidin-accumulating cells of the seed coat.
    Plant Cell, 2007. 19(6): p. 2023-38
    [PMID:17601828]