PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G158162_P03 | ||||||||
Common Name | pco092640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 963aa MW: 105141 Da PI: 6.7956 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.4 | 6.5e-19 | 370 | 469 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kvl+ sd+++ grlvlpk +ae++ ++++e++ lt++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ GRMZM2G158162_P03 370 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDARGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRID-P 459 99**************************555567778***************9989999999***9.********************887.7 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 +++lv+++++ GRMZM2G158162_P03 460 GGKLVMGFRK 469 8878888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-31 | 362 | 479 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.01E-21 | 367 | 470 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.34E-24 | 368 | 469 | No hit | No description |
Pfam | PF02362 | 3.8E-16 | 370 | 469 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-22 | 370 | 470 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.603 | 370 | 471 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.706 | 631 | 681 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.1E-10 | 636 | 678 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 963 aa Download sequence Send to blast |
MAMAGAGAAA AAAKRCMNPA CGALPASSVV VGAGGDWRKG WPLRSGGFAL LCDKCGLAYE 60 QFVFCDIFHQ KESGWRDCSF CGKRLHCGCV ASKNSYDLLD SGGIQCVTCM KNSAAQSASG 120 QVVPKLFPCP NNLLFFGKSD ELLSSRKFEQ PPSLMLDSRN DDIAIVNKSS HLFMVSGIEA 180 GQSSNILRQK EIENGPRQIK WEQPTLNIGD MGRPLLTRSQ SALESPQCTR RDDNKDPTTD 240 STTSESFPEA CLSMNLGIAN NGNRMEATST AERPMLSPTT AIAEGRELTT ALSPFQHAQR 300 ARHFLTRPPR VGEGAAFDPT RDMFPHLRVA RPPAEGRGRN QLLPRYWPRI TDQELQQISG 360 DSNSTIVPLF EKVLSASDAG RIGRLVLPKA CAEAYFPPIS QPEGRPLTIQ DARGKEWHFQ 420 FRFWPNNNSR MYVLEGVTPC IQSLQLQAGD TVTFSRIDPG GKLVMGFRKA TNTVSLPDSQ 480 ISAIANGSLL SETLFSTANE SIGVVSGYPG FLHSIKGAAD FHPSSLYDHH INSADGDVSW 540 NKADKFGSRP DEGSLQFLQK RSRNIGSKSR RFLIDAEDAM ELKLTWEEAQ ELLRPAPTAK 600 PTVVMIEDYE FEEYDEPPVF AKRSIFTIRA TGEQDQWIQC DECSKWRRLP LNVIVASKWT 660 CTDNSWDPKC CSCSAPEELT PKELQSVMQQ YEEMRRRKGS YGLKLNVAEM DASSFDALAT 720 GAVFGEVGNQ GTASVATTTR HPRHRPGCTC IVCIQPPSGK GPKHNPACTC NVCMTVRRRF 780 KTLMMRKKQR QSEREEAEAS KKIAWVNRDE PEGSSLSRSP QTLDTTRDSS DVTMFDKVAA 840 DVNKGHIDLN FHPAAPAVRG AGDQGQNGAQ QPRAVSMMGL LEVASRPLDN YMKQNGLTSL 900 AGEQGGGSSS TATVPPAPVE SEDRTSDEGR VASAEREADA MAIDEAGENQ QDKPADSAAA 960 AAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yzy_C | 9e-68 | 348 | 472 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5yzz_C | 9e-68 | 348 | 472 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5z00_C | 9e-68 | 348 | 472 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5z00_G | 9e-68 | 348 | 472 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5z00_K | 9e-68 | 348 | 472 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5z00_M | 9e-68 | 348 | 472 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 9e-68 | 348 | 472 | 2 | 126 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 776 | 787 | RRRFKTLMMRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.14102 | 0.0 | ear| embryo| endosperm| meristem| root| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G158162 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G158162_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT062927 | 0.0 | BT062927.1 Zea mays full-length cDNA clone ZM_BFc0008I17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001353692.1 | 0.0 | uncharacterized protein LOC100382023 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | C0P3Q8 | 0.0 | C0P3Q8_MAIZE; B3 domain-containing transcription repressor VAL2 | ||||
TrEMBL | K0DCR1 | 0.0 | K0DCR1_MAIZE; ABI32 ABI3VP1 type transcription factor (Fragment) | ||||
STRING | GRMZM2G158162_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 0.0 | high-level expression of sugar-inducible gene 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G158162_P03 |
Entrez Gene | 100382023 |
Publications ? help Back to Top | |||
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