PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G158141_P01
Common NameLOC103641406, ZEAMMB73_127678, Zm.147504
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 512aa    MW: 53439.9 Da    PI: 9.2507
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G158141_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.4e-06244266223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         Cp Cg++F+  ++L++H+   H
  GRMZM2G158141_P01 244 ACPQCGEVFTKADTLEHHQAIrH 266
                        6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280243266IPR007087Zinc finger, C2H2
PROSITE profilePS501579.39243271IPR007087Zinc finger, C2H2
SuperFamilySSF563994.6E-14268351No hitNo description
Gene3DG3DSA:3.90.228.107.1E-8270508IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563994.6E-14379508No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007015developmental stageradicle emergence stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MSLATLLLPS PGSMATKAGT AGDHHTDSRR HDHDHHGSKC KKKPPASPQP SSLASAPRTP  60
PSGARSQRVM VMAASSSSPR KKSPKAPAAG KNSRAQYQQH RGQATKKKAT AAASWDWEQV  120
KSLLSCRSVT AAARVHDPAA PSALARLRGS GAGTCGASLC AMRDVVDAAS SAASSAAASA  180
SASGDRDTAP LNRRRAHRGA SSSSAGAGSS HHSSLRGLSG CYECRAINVE PMSRRYPRPR  240
ELCACPQCGE VFTKADTLEH HQAIRHAVSE LGPEDSGRNI VEIIFKSSWH KRDRPICHID  300
RILKVHNAPR TVARFEAYRD AVRSRCRAVV AARAAADGNE LLRFHSAPLA CALGLGGATA  360
LCCAAADADA DAPAPPCGVC TAIRHGFAPW LGAHPLGVRT TASSGRAHDC ASDNNNPSPP  420
PPHQTQSAAS DVSNAAACRA MLVCRVIAGR VRRDGDGDTS AAAGEDQEGP FDSVAGEDAA  480
SSSVYGNLEE LFVANPRAIL PCFVVIYRVL DS
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G158141
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G158141_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0856070.0BT085607.2 Zea mays full-length cDNA clone ZM_BFc0038L11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001309935.10.0uncharacterized protein LOC103641406
TrEMBLK7TIW40.0K7TIW4_MAIZE; C2H2-like zinc finger protein
STRINGGRMZM2G158141_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124312731
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.16e-65C2H2-like zinc finger protein