PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G158117_P01 | ||||||||
Common Name | MYBR87, ZEAMMB73_193951, Zm.25130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 87aa MW: 9942.02 Da PI: 7.3445 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.4 | 3.3e-08 | 14 | 61 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 W++ E + + +a + +G g +W+++++ mg +++++++ ++ ++ GRMZM2G158117_P01 14 QWSQKENKMFEEALAYYGEGtpnRWDKVSSAMGGIKSAEEVRCHYENL 61 7********************************778********9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.667 | 7 | 62 | IPR017877 | Myb-like domain |
SMART | SM00717 | 8.3E-4 | 11 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.89E-11 | 12 | 61 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.7E-7 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.86E-5 | 15 | 61 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MSASRSSSPN SMSQWSQKEN KMFEEALAYY GEGTPNRWDK VSSAMGGIKS AEEVRCHYEN 60 LDYDVKMIES GNVPYPKYKT QGFWTRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-20 | 6 | 82 | 2 | 77 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.25130 | 1e-148 | aerial organ| embryo |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G158117 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G158117_P01 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955181 | 1e-146 | EU955181.1 Zea mays clone 1515957 SANT/MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147389.1 | 4e-60 | uncharacterized LOC100280998 | ||||
Swissprot | Q6NNN0 | 1e-21 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | A0A3L6DU87 | 8e-59 | A0A3L6DU87_MAIZE; Protein RADIALIS-like 3 | ||||
STRING | GRMZM2G158117_P01 | 2e-59 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1067 | 33 | 121 | Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 9e-22 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G158117_P01 |
Entrez Gene | 100280998 |
Publications ? help Back to Top | |||
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