PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G157679_P01
Common NameLOC100279528
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 809aa    MW: 89139.9 Da    PI: 6.4786
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G157679_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS389.83.1e-1194348032374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        ++lL++cA+ v+++d + a++lL++++++asp+gd  qRla++f+++L+arla+++s++yk+l +++ +    +++l+a++l+  ++P+ k+
  GRMZM2G157679_P01 434 ETLLVHCAQSVATDDRRGATELLKQIRQHASPNGDGDQRLAHCFANGLEARLAGNGSQIYKSLIMTRFP---CTDVLKAYQLYLAACPFKKI 522
                        789****************************************************************99...9******************* PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                        sh+ aNq+I++ave++++vHi+D++i +G+QWp+L+q L++Rp+gpp+lRiT+++ p++g   +e++eetg+ L+++Ae+++vpfef++ + 
  GRMZM2G157679_P01 523 SHFFANQTIMNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSTRPGGPPRLRITAIDTPHPGfrPAERIEETGRYLKDYAETFNVPFEFRA-IP 613
                        **********************************************************99*****************************.7* PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                        +r+e++++e+L++ ++E l+Vn++++ ++l+desv  es+r+ vL+++++++P+++++   + ++n++ F+ rf eal++ysa+fd+le+++
  GRMZM2G157679_P01 614 SRFEAVQIEDLHIAKDELLIVNSMFKFKTLMDESVVAESPRNMVLSTIRKMNPHLFIHGIINGSYNAPFFASRFREALYHYSAIFDMLETNI 705
                        ******************************************************************************************** PP

               GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                        pr++e+r  +E +l+gre+ nv++ceg er er et+++W+ r ++aGF+++p++++++k a+  +r +++d + ++e++ +l++gWk+r +
  GRMZM2G157679_P01 706 PRDNEQRLLIESALFGREAINVISCEGLERMERPETYKQWQVRYQRAGFRQLPINQDIMKRAREKVRCYHKD-FLIDEDNRWLLQGWKGRIV 796
                        **********************************************************************77.******************* PP

               GRAS 368 vsvSaWr 374
                        +++S W+
  GRMZM2G157679_P01 797 LALSTWK 803
                        ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.66407784IPR005202Transcription factor GRAS
PfamPF035141.1E-116434803IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MVMDAGLHEP CALLPGSKRD SHMLVYPQIA AAANGFTAQE LESLLFLSSD GITLAAGSGG  60
GGGGGSYLNV APTTVVPPAP TNRASPPRDV SAAPPSVGQP DDSEAFSDIV LGYINRMLMA  120
EDIDDKFEHY PEHPAVLAAE KPFLEILAER PSSSGGSAVE SPGGSSVGNS CYSARSCTCA  180
TATAASDAFG AVLTPALDFP SAAFLQPPQL YQDLSPEGSV VDAGGAWPYD STEFYQLHSN  240
PSSFASSNGS CATISDGFES LLSSPGVMPD VGFTDFAVQS QQAMQFCRGF EEASKFLPDE  300
SKLVIDLEKP ASVTSLVANI KGENRFAEVK AEKADVQAEI HRGKKHFYGD DLDAEEGRRS  360
KHSAPAIDTD HLVREMMDKV LLCNGETCSK GVKELREALQ HDVAKNSHGV HGKGSGHGKG  420
RGKKQPKKEV VDLETLLVHC AQSVATDDRR GATELLKQIR QHASPNGDGD QRLAHCFANG  480
LEARLAGNGS QIYKSLIMTR FPCTDVLKAY QLYLAACPFK KISHFFANQT IMNAVEKAKK  540
VHIVDYGIYY GFQWPCLIQR LSTRPGGPPR LRITAIDTPH PGFRPAERIE ETGRYLKDYA  600
ETFNVPFEFR AIPSRFEAVQ IEDLHIAKDE LLIVNSMFKF KTLMDESVVA ESPRNMVLST  660
IRKMNPHLFI HGIINGSYNA PFFASRFREA LYHYSAIFDM LETNIPRDNE QRLLIESALF  720
GREAINVISC EGLERMERPE TYKQWQVRYQ RAGFRQLPIN QDIMKRAREK VRCYHKDFLI  780
DEDNRWLLQG WKGRIVLALS TWKPDHRSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-514378038375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.850140.0aerial organ| ear| endosperm| leaf| pollen| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G157679
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G157679_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0544010.0BT054401.1 Zea mays full-length cDNA clone ZM_BFc0031I09 mRNA, complete cds.
GenBankBT0614450.0BT061445.1 Zea mays full-length cDNA clone ZM_BFb0147E24 mRNA, complete cds.
GenBankBT0663530.0BT066353.1 Zea mays full-length cDNA clone ZM_BFb0375H09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001145998.10.0SCARECROW-like protein
RefseqXP_008672704.10.0SCARECROW-like protein isoform X1
TrEMBLB7ZYK90.0B7ZYK9_MAIZE; Uncharacterized protein
TrEMBLK0D9R00.0K0D9R0_MAIZE; GRAS23 GRAS type transcription factor (Fragment)
STRINGGRMZM2G157679_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-177GRAS family protein