PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G157197_P03 | ||||||||
Common Name | LOC100285677 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 219aa MW: 23088.6 Da PI: 5.2706 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H GRMZM2G157197_P03 71 FTCNYCQRKFFSSQALGGHQNAH 93 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.06E-6 | 68 | 98 | No hit | No description |
PROSITE profile | PS50157 | 11.323 | 71 | 98 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence Send to blast |
MNSKEMCQEP CDELSEISSQ EASNSSGLVS LDLTLTVAAA AAAESSTTDN SNSGGTPADA 60 AAVAREPSRV FTCNYCQRKF FSSQALGGHQ NAHRRERTLA RRTLRLDAAG PYGYYADVAS 120 LPLYGSGLYP IGIQAHASMA AHPEQQQRHE DAAELRPARG LLSPMPFLVA DEAEMSFGWP 180 GSFRPATAVA PAPAGSAVLN SAGGVAVHAR EEPDLTLRL |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.92344 | 0.0 | sheath |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G157197 |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G157197_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT088212 | 0.0 | BT088212.1 Zea mays full-length cDNA clone ZM_BFc0067J23 mRNA, complete cds. | |||
GenBank | EU976944 | 0.0 | EU976944.1 Zea mays clone 994515 zinc finger protein 7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001300990.1 | 1e-160 | zinc finger protein 7 | ||||
Refseq | XP_008680366.1 | 1e-160 | zinc finger protein 7 isoform X1 | ||||
Refseq | XP_008680370.1 | 1e-160 | zinc finger protein 7 isoform X1 | ||||
Refseq | XP_023158235.1 | 1e-160 | zinc finger protein 7 isoform X1 | ||||
Swissprot | Q39263 | 6e-28 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A317YIC0 | 1e-158 | A0A317YIC0_MAIZE; Zinc finger protein 4 | ||||
TrEMBL | B6UI79 | 1e-158 | B6UI79_MAIZE; Zinc finger protein 1 | ||||
STRING | GRMZM2G157197_P01 | 1e-159 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66140.1 | 6e-17 | zinc finger protein 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G157197_P03 |
Entrez Gene | 100285677 |
Publications ? help Back to Top | |||
---|---|---|---|
|