PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G156977_P01
Common NameLOC100282983
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 317aa    MW: 34542.9 Da    PI: 7.635
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G156977_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.11.1e-50111481128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        lppGfrFhP+d+elv +yL++k++gk         ++ +vd++k+ePwdLp ++  + +ewyfFs +d+kyatg+r+nrat++gyWkatgkd
  GRMZM2G156977_P01  11 LPPGFRFHPRDDELVLDYLCRKLSGKGgggAYGGIAMVDVDLNKCEPWDLPDEACVGGREWYFFSLHDRKYATGQRTNRATRTGYWKATGKD 102
                        79************************9776333356999************7666789********************************** PP

                NAM  90 kevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++ ++       + +lvg++ktLvfy+grap+g+kt+Wvmhe+r+
  GRMZM2G156977_P01 103 RPISVSgrrgagdTAALVGMRKTLVFYQGRAPRGSKTEWVMHEFRV 148
                        ****9866655544445***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-563178IPR003441NAC domain
PROSITE profilePS5100554.20111178IPR003441NAC domain
PfamPF023651.6E-2512148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MSLISMMEAR LPPGFRFHPR DDELVLDYLC RKLSGKGGGG AYGGIAMVDV DLNKCEPWDL  60
PDEACVGGRE WYFFSLHDRK YATGQRTNRA TRTGYWKATG KDRPISVSGR RGAGDTAALV  120
GMRKTLVFYQ GRAPRGSKTE WVMHEFRVDG PPVADRPGSP LLQLQLQEDW VLCRVFYKSR  180
TASTRPAAGP DEAGPLSSQL IGGLPMPRMA APADAAYLSF DVTPAAGGYY HHQDSGPADA  240
RHHLPPPPAQ PFSRSSLSSL RDLLSSMVEG SDAAAAVRET ELHLQLEGWT EAAYAQQQGG  300
AMPAHPQQTW SPFLSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-50618215172NAC domain-containing protein 19
3swm_B7e-50618215172NAC domain-containing protein 19
3swm_C7e-50618215172NAC domain-containing protein 19
3swm_D7e-50618215172NAC domain-containing protein 19
3swp_A7e-50618215172NAC domain-containing protein 19
3swp_B7e-50618215172NAC domain-containing protein 19
3swp_C7e-50618215172NAC domain-containing protein 19
3swp_D7e-50618215172NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.332250.0silk
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G156977
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G156977_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9630310.0EU963031.1 Zea mays clone 247548 NAC domain-containing protein 21/22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149359.10.0uncharacterized protein LOC100282983
SwissprotQ84TE61e-69NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLB6TDG60.0B6TDG6_MAIZE; NAC domain-containing protein 21/22
STRINGGRMZM2G156977_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Representative plantOGRP1985222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.16e-73NAC family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  6. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  7. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]