PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G155980_P02
Common NameZm.41332
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family FAR1
Protein Properties Length: 870aa    MW: 98009.6 Da    PI: 6.1481
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G155980_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.21.1e-17122206191
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        +fY++YA ++GF v+++ks+ + + g + +  +vC+k+g+ +e+        + r++ +t+C+a+++ ++  d+  ++t+++leHnH+l+p
  GRMZM2G155980_P02 122 NFYKRYALRTGFGVCVKKSSFT-KAGLCRRLVLVCNKWGNGKEDACY-----QARPTAKTNCQATVVARLLGDDLLHLTDVNLEHNHALNP 206
                        6*****************9998.6777****************9999.....999*********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-15122206IPR004330FAR1 DNA binding domain
PfamPF105511.2E-26310401IPR018289MULE transposase domain
PROSITE profilePS509669.26590626IPR007527Zinc finger, SWIM-type
SMARTSM005750.0047601628IPR006564Zinc finger, PMZ-type
PfamPF044349.2E-5603622IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MTVSYRPQEF VRVIPPLIGS WISRGPSMME VGLNPGEELD FGDNQEDDDD AGDISPASKE  60
LAAMVAAAAA AETVELDDGG AGVEAAASAA AAASSSSAAA RYGDDRTPRD GMVFKSYEEV  120
LNFYKRYALR TGFGVCVKKS SFTKAGLCRR LVLVCNKWGN GKEDACYQAR PTAKTNCQAT  180
VVARLLGDDL LHLTDVNLEH NHALNPSAAR FLRCYKTLPS GLSKDLVVRA ARGECSVAGD  240
IDVPIFDEWG RLKTGQADVL AINAFFTQMQ AKLPNSFYVM DFYVEGHLRS VLWADSRSRA  300
AYQYFSDAVW IDTACLRNKY HVPLVSFLGV NHHGQLVLLG CGLLSDESTE SFLWLFKSWL  360
TCMKGQPPNA IVTDECVAIK AAVREVFPKT RHRISDWHVV RSISEKIGDL PEYEAMRTNL  420
VTVIYDSLND NEFEARWKNW IDRFSLQDNE WITFLYENRH LWAPAFLRDT FSAGLCTVSQ  480
RESPSTFFED AVSSETTLVT FLASYMTLLD NKYKMEQQDD FDSLNSSRLL ISKYQMEEQL  540
SRLYTLNMFM KFQDELKATM HCQVQLDGSA SSFIVIDLTE AGSEMLNKKY EVVHCMATNR  600
MECNCGLFQF HGIVCRHALS VLKWQQVYDI PPCYVLNRWR ADFKQLHYLD NPSKDLATSN  660
HVERYDYISL QFLRLVEIGM VSDEKYRHAV RLLKDMKETL LDDNLCRDLE QKLTPAERAI  720
VNGDNHTQPG SSEGGAAKKR RGRPPKKNKE INMDSMVNPY GNKDPLLVSS DVTQKDTFHS  780
ASTTSNLGTH VRTHGIVDLM EEVNPSELSF DSRYGVQSGH SHHFGNNQLN TGNTLRFGQS  840
TSAAEQSRVQ WVFHNGMYQD DQVTYGRRTS
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G155980
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G155980_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665740.10.0protein FAR1-RELATED SEQUENCE 6 isoform X2
RefseqXP_008665741.10.0protein FAR1-RELATED SEQUENCE 6 isoform X2
RefseqXP_008665742.10.0protein FAR1-RELATED SEQUENCE 6 isoform X2
TrEMBLA0A1B6QGW00.0A0A1B6QGW0_SORBI; Uncharacterized protein
STRINGGRMZM2G155980_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1388844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.11e-122FAR1-related sequence 8