PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G155980_P01
Common NameZm.41332
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family FAR1
Protein Properties Length: 863aa    MW: 97236.7 Da    PI: 6.0768
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G155980_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.21.1e-17122206191
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        +fY++YA ++GF v+++ks+ + + g + +  +vC+k+g+ +e+        + r++ +t+C+a+++ ++  d+  ++t+++leHnH+l+p
  GRMZM2G155980_P01 122 NFYKRYALRTGFGVCVKKSSFT-KAGLCRRLVLVCNKWGNGKEDACY-----QARPTAKTNCQATVVARLLGDDLLHLTDVNLEHNHALNP 206
                        6*****************9998.6777****************9999.....999*********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-15122206IPR004330FAR1 DNA binding domain
PfamPF105511.1E-26310401IPR018289MULE transposase domain
PROSITE profilePS509669.26590626IPR007527Zinc finger, SWIM-type
SMARTSM005750.0047601628IPR006564Zinc finger, PMZ-type
PfamPF044349.1E-5603622IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006354anatomyear floret
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009074anatomystyle
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007123developmental stageLP.06 six leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 863 aa     Download sequence    Send to blast
MTVSYRPQEF VRVIPPLIGS WISRGPSMME VGLNPGEELD FGDNQEDDDD AGDISPASKE  60
LAAMVAAAAA AETVELDDGG AGVEAAASAA AAASSSSAAA RYGDDRTPRD GMVFKSYEEV  120
LNFYKRYALR TGFGVCVKKS SFTKAGLCRR LVLVCNKWGN GKEDACYQAR PTAKTNCQAT  180
VVARLLGDDL LHLTDVNLEH NHALNPSAAR FLRCYKTLPS GLSKDLVVRA ARGECSVAGD  240
IDVPIFDEWG RLKTGQADVL AINAFFTQMQ AKLPNSFYVM DFYVEGHLRS VLWADSRSRA  300
AYQYFSDAVW IDTACLRNKY HVPLVSFLGV NHHGQLVLLG CGLLSDESTE SFLWLFKSWL  360
TCMKGQPPNA IVTDECVAIK AAVREVFPKT RHRISDWHVV RSISEKIGDL PEYEAMRTNL  420
VTVIYDSLND NEFEARWKNW IDRFSLQDNE WITFLYENRH LWAPAFLRDT FSAGLCTVSQ  480
RESPSTFFED AVSSETTLVT FLASYMTLLD NKYKMEQQDD FDSLNSSRLL ISKYQMEEQL  540
SRLYTLNMFM KFQDELKATM HCQVQLDGSA SSFIVIDLTE AGSEMLNKKY EVVHCMATNR  600
MECNCGLFQF HGIVCRHALS VLKWQQVYDI PPCYVLNRWR ADFKQLHYLD NPSKDLATSN  660
HVERYDYISL QFLRLVEIGM VSDEKYRHAV RLLKDMKETL LDDNLCRDLE QKLTPAERAI  720
VNGDNHTQPG SSEGGAAKKR RGRPPKKNKE INMDSMDPLL VSSDVTQKDT FHSASTTSNL  780
GTHVRTHGIV DLMEEVNPSE LSFDSRYGVQ SGHSHHFGNN QLNTGNTLRF GQSTSAAEQS  840
RVQWVFHNGM YQDDQVTYGR RTS
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G155980
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G155980_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665743.10.0protein FAR1-RELATED SEQUENCE 6 isoform X3
TrEMBLA0A1B6QGW00.0A0A1B6QGW0_SORBI; Uncharacterized protein
STRINGGRMZM2G155980_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.11e-122FAR1-related sequence 8