PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G155816_P01 | ||||||||
Common Name | Zm.25949 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 160aa MW: 18646.2 Da PI: 9.5314 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.8 | 4.3e-53 | 10 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+evd++k+ePwdL+ +++ ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+ GRMZM2G155816_P01 10 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIREVDLNKLEPWDLKDrcriGTAEPQDEWYFFSHKDRKYPTGTRTNRATTAGFWKATGR 100 69****************************.9***************8435332233455******************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+++ g+ +gl+ktLvfy+grap+g+ktdW+mheyrl GRMZM2G155816_P01 101 DKAIFLGnAGRRIGLRKTLVFYTGRAPHGKKTDWIMHEYRL 141 *****9767888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-55 | 6 | 145 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.787 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-28 | 11 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MHPSCSPLAV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIREVDLNKL EPWDLKDRCR 60 IGTAEPQDEW YFFSHKDRKY PTGTRTNRAT TAGFWKATGR DKAIFLGNAG RRIGLRKTLV 120 FYTGRAPHGK KTDWIMHEYR LNDDNVEVPP ITVSTQRTTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-47 | 8 | 141 | 15 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-47 | 8 | 141 | 15 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-47 | 8 | 141 | 15 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-47 | 8 | 141 | 15 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-47 | 8 | 141 | 18 | 145 | NAC domain-containing protein 19 |
3swm_B | 3e-47 | 8 | 141 | 18 | 145 | NAC domain-containing protein 19 |
3swm_C | 3e-47 | 8 | 141 | 18 | 145 | NAC domain-containing protein 19 |
3swm_D | 3e-47 | 8 | 141 | 18 | 145 | NAC domain-containing protein 19 |
3swp_A | 3e-47 | 8 | 141 | 18 | 145 | NAC domain-containing protein 19 |
3swp_B | 3e-47 | 8 | 141 | 18 | 145 | NAC domain-containing protein 19 |
3swp_C | 3e-47 | 8 | 141 | 18 | 145 | NAC domain-containing protein 19 |
3swp_D | 3e-47 | 8 | 141 | 18 | 145 | NAC domain-containing protein 19 |
4dul_A | 2e-47 | 8 | 141 | 15 | 142 | NAC domain-containing protein 19 |
4dul_B | 2e-47 | 8 | 141 | 15 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.25949 | 0.0 | cell culture| pericarp |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G155816 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades, developing flowers, embryo and callus. Weakly expressed in roots. {ECO:0000269|PubMed:10660065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G155816_P01 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953045 | 0.0 | EU953045.1 Zea mays clone 1377565 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008645562.1 | 1e-112 | NAC domain-containing protein 76 | ||||
Swissprot | Q5Z6B6 | 1e-91 | NAC76_ORYSJ; NAC domain-containing protein 76 | ||||
TrEMBL | A0A1D6H5I5 | 1e-110 | A0A1D6H5I5_MAIZE; Protein SOMBRERO | ||||
STRING | GRMZM2G155816_P01 | 1e-117 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3461 | 37 | 81 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 1e-73 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G155816_P01 |
Publications ? help Back to Top | |||
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