PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G155662_P02 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Whirly | ||||||||
Protein Properties | Length: 205aa MW: 22338.6 Da PI: 10.1861 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 157.4 | 4.3e-49 | 91 | 201 | 1 | 111 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrk 92 s+yk+kaal+ +++ p f+ ldsg+ k+ ++G++ll++a+a+a+r+ydW +kq+f+ls+ e+++l+ l++ +sceffhdp+++ s+eGkvrk GRMZM2G155662_P02 91 SIYKGKAALSFDPRPPLFVPLDSGAYKVAKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEIGTLLTLGPTDSCEFFHDPFKGRSEEGKVRK 182 7******************************************************************************************* PP Whirly 93 alkvePlpdGsGlfvnlsv 111 +lk+eP pdG G f+nl+ GRMZM2G155662_P02 183 VLKIEPTPDGNGRFFNLKS 201 *****************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 6.1E-56 | 78 | 201 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.57E-46 | 84 | 200 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 7.0E-48 | 92 | 202 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MPPPAPLFLS LASTPPPALM PVHHPRAPQS LTLVPPVASS RKAAAVPACP VASPRHSDYF 60 DPRAPPPPRG DGGYGRPPNG AQDGRVFTSY SIYKGKAALS FDPRPPLFVP LDSGAYKVAK 120 EGFVLLQFAP AVATRQYDWT RKQVFSLSVW EIGTLLTLGP TDSCEFFHDP FKGRSEEGKV 180 RKVLKIEPTP DGNGRFFNLK SAYQR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 4e-58 | 55 | 199 | 12 | 151 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 4e-58 | 55 | 199 | 12 | 151 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 4e-58 | 55 | 199 | 12 | 151 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 4e-58 | 55 | 199 | 12 | 151 | p24: plant transcriptional regulator PBF-2 |
4koo_A | 8e-59 | 85 | 199 | 8 | 122 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_B | 8e-59 | 85 | 199 | 8 | 122 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_C | 8e-59 | 85 | 199 | 8 | 122 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_D | 8e-59 | 85 | 199 | 8 | 122 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koq_A | 9e-59 | 85 | 199 | 8 | 122 | Single-stranded DNA-binding protein WHY3, chloroplastic |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.88681 | 0.0 | cell culture| ear| meristem| ovary| pedicel| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G155662 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA and RNA binding protein that maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. Functions in RNA metabolism and is involved in the maturation of the atpF and 23S ribosomal RNAs. {ECO:0000269|PubMed:18676978, ECO:0000269|PubMed:19666500}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G155662_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT043360 | 0.0 | BT043360.1 Zea mays full-length cDNA clone ZM_BFc0169P08 mRNA, complete cds. | |||
GenBank | EU595664 | 0.0 | EU595664.1 Zea mays Whirly family nucleic acid binding protein (WHY1) mRNA, complete cds. | |||
GenBank | JX469972 | 0.0 | JX469972.1 Zea mays subsp. mays clone UT3235 WHIRLY-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001123589.1 | 1e-142 | single-stranded DNA-binding protein WHY1, chloroplastic | ||||
Swissprot | B2LXS7 | 1e-143 | WHY1_MAIZE; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A1Q1AUG7 | 1e-141 | A0A1Q1AUG7_MAIZE; Whirly1 | ||||
TrEMBL | K4JBV1 | 1e-141 | K4JBV1_MAIZE; WHIRLY-type transcription factor (Fragment) | ||||
STRING | GRMZM2G155662_P01 | 1e-141 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 2e-59 | ssDNA-binding transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G155662_P02 |
Publications ? help Back to Top | |||
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