PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G155252_P01
Common NameGBP13, LOC100275794
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GeBP
Protein Properties Length: 513aa    MW: 57275.5 Da    PI: 4.9315
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G155252_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57330.97.7e-10333420398
             DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafy.efvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                        ++r ws +De+ +L +l++ +++++  +  d +++  +   ++  ++++++ l++Kir+L+ ++++   +   g     s+ + ++ f+ls+
  GRMZM2G155252_P01 333 VERSWSYDDELKILNALVEHAQSHN-GSLPDSSHVLaNLTFDK--IDANEDKLTDKIRKLRTRYRRWLLQ---G---YTSSVSGSQLFKLSE 415
                        6899***************966666.45566555550555555..57899***************99988...3...445566678999999 PP

             DUF573  94 kiWgs 98 
                        ++Wg+
  GRMZM2G155252_P01 416 ILWGQ 420
                        99985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.3E-10334419IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MAAKRRARQP RTEDSKELGL NGGNEGSDEE EEESSKSDAL KRAEQPSPPS PEDAEAERSG  60
EASPQRSKPR GWVAMKTKTT TSKRVKKPSP ASEKEYEAGD SGDLSPASDP LPDNIVDAGD  120
NKMPATLKPG KKSSPTPQQE EERPEKRAAG SDGETVATSS PQRKKKSKRS VDKDRRKKNR  180
NQIRKALTQE DEDHDTVMAE QEQSNTSLPQ DEHAAREEEQ EEKMAQQEHA GDTSHPHDKD  240
MRSAHGEEQQ DANQEHADDT SPAEDNHSVD EEEQQVEPIP QQEQPNDTSP PQEKNRAQED  300
EETGAQVNGK ALEGRNAPST KLRSFESEKK PAVERSWSYD DELKILNALV EHAQSHNGSL  360
PDSSHVLANL TFDKIDANED KLTDKIRKLR TRYRRWLLQG YTSSVSGSQL FKLSEILWGQ  420
ADEDEQVEPT SRDFSVVSKL YPHLAKEVKA YAETHSSGDL IMGMVMTICD KKARDLDAKC  480
KKQQIETFKL ELGQANLTNE LLSALSSQTH VKF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161168QRKKKSKR
2163177KKKSKRSVDKDRRKK
3174184RRKKNRNQIRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.231890.0ear| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G155252
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G155252_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0429120.0BT042912.1 Zea mays full-length cDNA clone ZM_BFc0063B16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001143265.20.0uncharacterized protein LOC100275794
TrEMBLB4G0M40.0B4G0M4_MAIZE; GeBP transcription factor
STRINGGRMZM2G155252_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2280322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.16e-06DNA-binding storekeeper protein-related transcriptional regulator