PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G155252_P01 | ||||||||
Common Name | GBP13, LOC100275794 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GeBP | ||||||||
Protein Properties | Length: 513aa MW: 57275.5 Da PI: 4.9315 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 30.9 | 7.7e-10 | 333 | 420 | 3 | 98 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafy.efvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 ++r ws +De+ +L +l++ +++++ + d +++ + ++ ++++++ l++Kir+L+ ++++ + g s+ + ++ f+ls+ GRMZM2G155252_P01 333 VERSWSYDDELKILNALVEHAQSHN-GSLPDSSHVLaNLTFDK--IDANEDKLTDKIRKLRTRYRRWLLQ---G---YTSSVSGSQLFKLSE 415 6899***************966666.45566555550555555..57899***************99988...3...445566678999999 PP DUF573 94 kiWgs 98 ++Wg+ GRMZM2G155252_P01 416 ILWGQ 420 99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 5.3E-10 | 334 | 419 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence Send to blast |
MAAKRRARQP RTEDSKELGL NGGNEGSDEE EEESSKSDAL KRAEQPSPPS PEDAEAERSG 60 EASPQRSKPR GWVAMKTKTT TSKRVKKPSP ASEKEYEAGD SGDLSPASDP LPDNIVDAGD 120 NKMPATLKPG KKSSPTPQQE EERPEKRAAG SDGETVATSS PQRKKKSKRS VDKDRRKKNR 180 NQIRKALTQE DEDHDTVMAE QEQSNTSLPQ DEHAAREEEQ EEKMAQQEHA GDTSHPHDKD 240 MRSAHGEEQQ DANQEHADDT SPAEDNHSVD EEEQQVEPIP QQEQPNDTSP PQEKNRAQED 300 EETGAQVNGK ALEGRNAPST KLRSFESEKK PAVERSWSYD DELKILNALV EHAQSHNGSL 360 PDSSHVLANL TFDKIDANED KLTDKIRKLR TRYRRWLLQG YTSSVSGSQL FKLSEILWGQ 420 ADEDEQVEPT SRDFSVVSKL YPHLAKEVKA YAETHSSGDL IMGMVMTICD KKARDLDAKC 480 KKQQIETFKL ELGQANLTNE LLSALSSQTH VKF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 161 | 168 | QRKKKSKR |
2 | 163 | 177 | KKKSKRSVDKDRRKK |
3 | 174 | 184 | RRKKNRNQIRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.23189 | 0.0 | ear| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G155252 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G155252_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042912 | 0.0 | BT042912.1 Zea mays full-length cDNA clone ZM_BFc0063B16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001143265.2 | 0.0 | uncharacterized protein LOC100275794 | ||||
TrEMBL | B4G0M4 | 0.0 | B4G0M4_MAIZE; GeBP transcription factor | ||||
STRING | GRMZM2G155252_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22803 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00390.1 | 6e-06 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G155252_P01 |