PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G155217_P01 | ||||||||
Common Name | LOC100383774 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 463aa MW: 48933.6 Da PI: 6.8326 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.4 | 3.5e-05 | 346 | 383 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L GRMZM2G155217_P01 346 RKEKLGDRITALQQLVAPF-----GKTDTASVLHETIEYIKFL 383 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.668 | 334 | 383 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.06E-5 | 344 | 387 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.6E-8 | 344 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.02E-11 | 344 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MGDHAEMLHA APAMYNGAGA APHGGWWNTA VPATTCSTTE LAGFTTWSSA LAASYDLAAE 60 GTKAKSAAAS SESPGNNSSV TFQEPACVTD PPGVGTAVVQ VQQPLATGYA DWTHPYMSSG 120 ATTLHGFLQD GHQQDMSSAT EQSSMTASSL MNPSSNNLAL ALQGHHHHHQ EHEHQQQMLS 180 SFGSELLLSP TTSPYGFQSS LLRSLMEPAA ATKQALPGYQ QQQYDQYQQQ MGMGQARFAP 240 PAAGAASREA LQFSNDALFS WNPSAAGFGF GLGVPPAPDQ ASSVRSVVKP SPAAARATAT 300 LALKTALEGV GESASSIITK KKANGEPALK KPRLETPSPL PTFKVRKEKL GDRITALQQL 360 VAPFGKTDTA SVLHETIEYI KFLHDQVGVL SAPYLKNNGH HQVLRHLKSS SPDKSSKDDD 420 SHASEISLKG RGLCLVPISS TFAVASEVPV DFVWSTPFAA NFR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.32311 | 0.0 | leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G155217 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G155217_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068256 | 0.0 | BT068256.1 Zea mays full-length cDNA clone ZM_BFb0111F04 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001344621.1 | 0.0 | uncharacterized protein LOC100383774 | ||||
TrEMBL | A0A1D6DXM8 | 0.0 | A0A1D6DXM8_MAIZE; Transcription factor bHLH112 | ||||
STRING | GRMZM2G155217_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2216 | 37 | 87 | Representative plant | OGRP14841 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.3 | 2e-43 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G155217_P01 |
Entrez Gene | 100383774 |