PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G155043_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 489aa MW: 51403.4 Da PI: 9.0575 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.8 | 2.2e-14 | 146 | 192 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR++iN++f eL +++P + kK++Ka+iL A++Y+k+Lq GRMZM2G155043_P01 146 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILLDATRYLKELQ 192 5999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.885 | 142 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-18 | 146 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.18E-15 | 147 | 196 | No hit | No description |
Pfam | PF00010 | 7.2E-12 | 147 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-17 | 147 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-15 | 148 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MEDSSLFMQW AMDTLQHENN PAPASAAAVH GGFSEATFPS LKALREASHA AEMVQELIAD 60 ADVVRHAPNS WNSGDNTTAN YNVPAGWGFG GATAASALPG SHGMMEAPPA MATRGRPPPG 120 LVYRLPPTRR AGLKSLGSMA AAYAKDHIIA ERKRREKINQ RFIELSTVIP GLKKMDKATI 180 LLDATRYLKE LQEKLKDLEQ RKEAGGGSIE TLVLVKKPCL HAAAARDDDG GSSLPASPPA 240 GTPTEGKRLP EIEVQFSELE KTVAHTCDTI HSFVLCGDTT PSPRHSEVRG GEAAPSAHHA 300 NASGGESSPS PALVLDNVDR RPRVVLAAAP ANACDVVSPS PHASGSAEPS RACELAIRSR 360 ASVSGKLPHF LRLSRNALKS KPRRKVLLYF KAAAQIFLGV EVVHGGAVSA SDALLRWGWG 420 IITCVGARER TPGMALGSGG GVRALPGGWQ INAGAAAVEE GFTVTADDIV GRLSSALLRI 480 TSIGGCKRP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 155 | ERKRRE |
2 | 151 | 156 | RKRREK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G155043 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G155043_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008666761.1 | 0.0 | transcription factor bHLH18 | ||||
TrEMBL | A0A1D6KYW1 | 0.0 | A0A1D6KYW1_MAIZE; Transcription factor bHLH28 | ||||
STRING | GRMZM2G155043_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 | Representative plant | OGRP19488 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 5e-17 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G155043_P01 |