PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G154641_P02
Common NameHB48, LOC100502401
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HB-other
Protein Properties Length: 311aa    MW: 33959.4 Da    PI: 9.7892
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G154641_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.92.2e-10861231954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+  +++ LAk++gLt +qV++WF N R +
  GRMZM2G154641_P02  86 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 123
                        664459******************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.22864127IPR001356Homeobox domain
SMARTSM003897.4E-1167131IPR001356Homeobox domain
CDDcd000865.35E-1467128No hitNo description
SuperFamilySSF466891.63E-1769135IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-2970131IPR009057Homeodomain-like
PfamPF059202.7E-1984123IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MALRAMAKHF KCLKGMILSQ LRNITKAPAG KEGLSKDIAM FGLAGGSAAA LQRGSSVGAF  60
GQPHNIWRPQ RGLPERAVSV LRAWLFEHFL HPYPTDGDKQ MLAKQTGLTR NQVSNWFINA  120
RVRLWKPMVE EIHNLEMRQV HKHPVLDKGQ HVLHHQTQHS FESSGKPSDP SDSQLGQSSS  180
ITRNHNIPAS QGFADELSEM SHSIQQGQVT FAYNGMSAPH HSLASSQHHQ QAGPMSGIGG  240
AGNGGVSLTL GLHQNNRVCI AEPLPASVPP NLAHRFGLEE VSDPYMMGSF GNQDRHFGKE  300
IGGHLVHDFV G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-1773131563Homeobox protein Meis2
3k2a_B4e-1773131563Homeobox protein Meis2
4xrs_A4e-1773130158Homeobox protein Meis1
4xrs_B4e-1773130158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.10420.0endosperm| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G154641
Functional Description ? help Back to Top
Source Description
UniProtRequired for specifying floral primordia and establishing early internode patterning events during inflorescence development. {ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G154641_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9736590.0EU973659.1 Zea mays clone 403650 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001310858.10.0uncharacterized protein LOC100502401
SwissprotQ9SJJ36e-44BLH8_ARATH; BEL1-like homeodomain protein 8
TrEMBLA0A1D6N7560.0A0A1D6N756_MAIZE; BEL1-like homeodomain protein 9
TrEMBLA0A3L6FHT80.0A0A3L6FHT8_MAIZE; BEL1-like homeodomain protein 8
STRINGGRMZM2G154641_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.15e-46BEL1-like homeodomain 8
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]