PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G154641_P01 | ||||||||
Common Name | HB48, LOC100502401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TALE | ||||||||
Protein Properties | Length: 587aa MW: 63158.8 Da PI: 7.7811 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.7 | 5.3e-10 | 362 | 399 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + GRMZM2G154641_P01 362 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 399 554459******************************88 PP | |||||||
2 | BELL | 92.6 | 3.7e-30 | 228 | 297 | 3 | 72 |
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +e q kk++L+s++eeV+krY+ y++q++tvi+sFe+vag +a+p++++Al+a+++hF+cLk +i +q+ GRMZM2G154641_P01 228 AEQQWKKTRLISMMEEVCKRYRLYYQQVHTVINSFETVAGFSNAAPFAAMALRAMAKHFKCLKGMILSQL 297 5899**************************************************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.1E-38 | 158 | 295 | IPR006563 | POX domain |
Pfam | PF07526 | 1.1E-35 | 163 | 293 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.228 | 340 | 403 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.4E-11 | 343 | 407 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.00E-13 | 343 | 404 | No hit | No description |
SuperFamily | SSF46689 | 4.28E-17 | 345 | 411 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-28 | 346 | 407 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.2E-19 | 360 | 399 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0048645 | Biological Process | organ formation | ||||
GO:0080006 | Biological Process | internode patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 587 aa Download sequence Send to blast |
MSSAAGGYGG GGGAGSGAEP HGHADFLLHH HAQHVAAQQL YHVPQHSRRE KLRFPQDDAP 60 PHASASVPQQ HGGAVAWPPP PPPPAFYSYA SSSTSSYSPH SPTLAQAQLV VAHGLAPPLS 120 SQIPTQNFAL SLSSSSSNPP PPPPQPRRPH AAPFGPFTGY AAVLGRSRFL LPAEKLLEEI 180 CDVGGAASRV DRSASDEGLL DADPMESIDH EMDGADRVAN DAGPISGAEQ QWKKTRLISM 240 MEEVCKRYRL YYQQVHTVIN SFETVAGFSN AAPFAAMALR AMAKHFKCLK GMILSQLRNI 300 TKAPAGKEGL SKDIAMFGLA GGSAAALQRG SSVGAFGQPH NIWRPQRGLP ERAVSVLRAW 360 LFEHFLHPYP TDGDKQMLAK QTGLTRNQVS NWFINARVRL WKPMVEEIHN LEMRQVHKHP 420 VLDKGQHVLH HQTQHSFESS GKPSDPSDSQ LGQSSSITRN HNIPASQGFA DELSEMSHSI 480 QQGQVTFAYN GMSAPHHSLA SSQHHQQAGP MSGIGGAGNG GVSLTLGLHQ NNRVCIAEPL 540 PASVPPNLAH RFGLEEVSDP YMMGSFGNQD RHFGKEIGGH LVHDFVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-16 | 349 | 407 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-16 | 349 | 407 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 1e-16 | 349 | 406 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-16 | 349 | 406 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 1e-16 | 349 | 407 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 1e-16 | 349 | 407 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.1042 | 0.0 | endosperm| meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G154641 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G154641_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728379 | 0.0 | KJ728379.1 Zea mays clone pUT6661 HB transcription factor (HB48) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001310858.1 | 0.0 | uncharacterized protein LOC100502401 | ||||
TrEMBL | A0A060D3C2 | 0.0 | A0A060D3C2_MAIZE; BEL1-like homeodomain protein 9 (Fragment) | ||||
STRING | GRMZM2G154641_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2528 | 38 | 81 | Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27990.1 | 3e-70 | BEL1-like homeodomain 8 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G154641_P01 |
Entrez Gene | 100502401 |
Publications ? help Back to Top | |||
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