PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G154641_P01
Common NameHB48, LOC100502401
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 587aa    MW: 63158.8 Da    PI: 7.7811
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G154641_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.75.3e-103623991954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+  +++ LAk++gLt +qV++WF N R +
  GRMZM2G154641_P01 362 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 399
                        554459******************************88 PP

2BELL92.63.7e-30228297372
               BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        +e q kk++L+s++eeV+krY+ y++q++tvi+sFe+vag  +a+p++++Al+a+++hF+cLk +i +q+
  GRMZM2G154641_P01 228 AEQQWKKTRLISMMEEVCKRYRLYYQQVHTVINSFETVAGFSNAAPFAAMALRAMAKHFKCLKGMILSQL 297
                        5899**************************************************************9996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-38158295IPR006563POX domain
PfamPF075261.1E-35163293IPR006563POX domain
PROSITE profilePS5007112.228340403IPR001356Homeobox domain
SMARTSM003897.4E-11343407IPR001356Homeobox domain
CDDcd000862.00E-13343404No hitNo description
SuperFamilySSF466894.28E-17345411IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28346407IPR009057Homeodomain-like
PfamPF059206.2E-19360399IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MSSAAGGYGG GGGAGSGAEP HGHADFLLHH HAQHVAAQQL YHVPQHSRRE KLRFPQDDAP  60
PHASASVPQQ HGGAVAWPPP PPPPAFYSYA SSSTSSYSPH SPTLAQAQLV VAHGLAPPLS  120
SQIPTQNFAL SLSSSSSNPP PPPPQPRRPH AAPFGPFTGY AAVLGRSRFL LPAEKLLEEI  180
CDVGGAASRV DRSASDEGLL DADPMESIDH EMDGADRVAN DAGPISGAEQ QWKKTRLISM  240
MEEVCKRYRL YYQQVHTVIN SFETVAGFSN AAPFAAMALR AMAKHFKCLK GMILSQLRNI  300
TKAPAGKEGL SKDIAMFGLA GGSAAALQRG SSVGAFGQPH NIWRPQRGLP ERAVSVLRAW  360
LFEHFLHPYP TDGDKQMLAK QTGLTRNQVS NWFINARVRL WKPMVEEIHN LEMRQVHKHP  420
VLDKGQHVLH HQTQHSFESS GKPSDPSDSQ LGQSSSITRN HNIPASQGFA DELSEMSHSI  480
QQGQVTFAYN GMSAPHHSLA SSQHHQQAGP MSGIGGAGNG GVSLTLGLHQ NNRVCIAEPL  540
PASVPPNLAH RFGLEEVSDP YMMGSFGNQD RHFGKEIGGH LVHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16349407563Homeobox protein Meis2
3k2a_B1e-16349407563Homeobox protein Meis2
4xrs_A1e-16349406158Homeobox protein Meis1
4xrs_B1e-16349406158Homeobox protein Meis1
5bng_A1e-16349407159Homeobox protein Meis2
5bng_B1e-16349407159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.10420.0endosperm| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G154641
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G154641_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283790.0KJ728379.1 Zea mays clone pUT6661 HB transcription factor (HB48) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001310858.10.0uncharacterized protein LOC100502401
TrEMBLA0A060D3C20.0A0A060D3C2_MAIZE; BEL1-like homeodomain protein 9 (Fragment)
STRINGGRMZM2G154641_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.13e-70BEL1-like homeodomain 8
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]