PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G154182_P03 | ||||||||
Common Name | ZEAMMB73_390777, Zm.5914 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 192aa MW: 21148.1 Da PI: 9.7694 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.6 | 1.2e-53 | 23 | 153 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhP+d e+v++yL++kv ++++++ ++i+e+d++k+ePwdLp+k+k +ekewyfF ++d+ky+tg r+nrat++gyWkatgkdkev GRMZM2G154182_P03 23 LPPGFRFHPSDFEIVSFYLTNKVLNTRFTC-TAITEADLNKIEPWDLPSKAKMGEKEWYFFYQKDRKYPTGLRANRATEAGYWKATGKDKEV 113 79**************************99.88***************99999*************************************** PP NAM 93 lskkgel...vglkktLvfykgrapkgektdWvmheyrle 129 +++ + + vg+kktLvfy+grap+g kt+Wvmheyrle GRMZM2G154182_P03 114 YNAAEGVavlVGMKKTLVFYRGRAPRGDKTNWVMHEYRLE 153 **83333455****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-57 | 15 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.573 | 23 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-27 | 24 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MAADQQPQLQ EEMNDAAGGG LRLPPGFRFH PSDFEIVSFY LTNKVLNTRF TCTAITEADL 60 NKIEPWDLPS KAKMGEKEWY FFYQKDRKYP TGLRANRATE AGYWKATGKD KEVYNAAEGV 120 AVLVGMKKTL VFYRGRAPRG DKTNWVMHEY RLEGSGRLPA GLASATGSAA ANAAAALKAS 180 AYKVRCVAVA VV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-48 | 21 | 152 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.5914 | 0.0 | embryo| endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G154182 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G154182_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061107 | 0.0 | BT061107.1 Zea mays full-length cDNA clone ZM_BFb0104E18 mRNA, complete cds. | |||
GenBank | JX428480 | 0.0 | JX428480.1 Zea mays subsp. mays clone pUT3077 NAC130 NAC type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001295428.1 | 1e-132 | NAC domain-containing protein 100 | ||||
Refseq | XP_008655529.2 | 1e-132 | NAC domain-containing protein 100 isoform X1 | ||||
Swissprot | Q9FK44 | 2e-71 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | C0HFK1 | 1e-118 | C0HFK1_MAIZE; Uncharacterized protein | ||||
TrEMBL | K0DF68 | 1e-118 | K0DF68_MAIZE; NAC130 NAC type transcription factor (Fragment) | ||||
STRING | GRMZM2G154182_P01 | 1e-132 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 7e-74 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G154182_P03 |
Publications ? help Back to Top | |||
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