PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G154182_P02
Common NameZEAMMB73_390777, Zm.5914
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 358aa    MW: 38395.6 Da    PI: 7.4895
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G154182_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.36e-53231531129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhP+d e+v++yL++kv ++++++ ++i+e+d++k+ePwdLp+k+k +ekewyfF ++d+ky+tg r+nrat++gyWkatgkdkev
  GRMZM2G154182_P02  23 LPPGFRFHPSDFEIVSFYLTNKVLNTRFTC-TAITEADLNKIEPWDLPSKAKMGEKEWYFFYQKDRKYPTGLRANRATEAGYWKATGKDKEV 113
                        79**************************99.88***************99999*************************************** PP

                NAM  93 lskkgel...vglkktLvfykgrapkgektdWvmheyrle 129
                        +++ + +   vg+kktLvfy+grap+g kt+Wvmheyrle
  GRMZM2G154182_P02 114 YNAAEGVavlVGMKKTLVFYRGRAPRGDKTNWVMHEYRLE 153
                        **83333455****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-6015194IPR003441NAC domain
PROSITE profilePS5100556.81223194IPR003441NAC domain
PfamPF023651.0E-2624152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAADQQPQLQ EEMNDAAGGG LRLPPGFRFH PSDFEIVSFY LTNKVLNTRF TCTAITEADL  60
NKIEPWDLPS KAKMGEKEWY FFYQKDRKYP TGLRANRATE AGYWKATGKD KEVYNAAEGV  120
AVLVGMKKTL VFYRGRAPRG DKTNWVMHEY RLEGSGRLPA GLASATGSAA ANAAAALKAS  180
AYKDEWVVCR VFHKTTGIKK TTAAPAYQVA MAGAEMDQNQ NNFPGIPFPM PMQFPMLPDF  240
SLDPVPPYYP NAAGAGMSML PMAAGIGGGA GGFQLNGAAL FGNPMAAPQP MSFYHQMGAA  300
GTACAGGFDV SAPESRPSSM VSQKDDQANG AEISSMMSVA GPGPATTTTI EMDGVWKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-482120015171NO APICAL MERISTEM PROTEIN
1ut4_B2e-482120015171NO APICAL MERISTEM PROTEIN
1ut7_A2e-482120015171NO APICAL MERISTEM PROTEIN
1ut7_B2e-482120015171NO APICAL MERISTEM PROTEIN
3swm_A2e-482120018174NAC domain-containing protein 19
3swm_B2e-482120018174NAC domain-containing protein 19
3swm_C2e-482120018174NAC domain-containing protein 19
3swm_D2e-482120018174NAC domain-containing protein 19
3swp_A2e-482120018174NAC domain-containing protein 19
3swp_B2e-482120018174NAC domain-containing protein 19
3swp_C2e-482120018174NAC domain-containing protein 19
3swp_D2e-482120018174NAC domain-containing protein 19
4dul_A2e-482120015171NAC domain-containing protein 19
4dul_B2e-482120015171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.59140.0embryo| endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G154182
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G154182_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0611070.0BT061107.1 Zea mays full-length cDNA clone ZM_BFb0104E18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008655530.20.0NAC domain-containing protein 100 isoform X2
SwissprotQ9FK449e-76NAC87_ARATH; NAC domain-containing protein 87
TrEMBLC0HFK10.0C0HFK1_MAIZE; Uncharacterized protein
TrEMBLK0DF680.0K0DF68_MAIZE; NAC130 NAC type transcription factor (Fragment)
STRINGGRMZM2G154182_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.29e-78Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]