PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G154182_P01
Common NameLOC606433, ZEAMMB73_390777, Zm.5914
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 359aa    MW: 38523.8 Da    PI: 7.4895
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G154182_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.36e-53231531129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhP+d e+v++yL++kv ++++++ ++i+e+d++k+ePwdLp+k+k +ekewyfF ++d+ky+tg r+nrat++gyWkatgkdkev
  GRMZM2G154182_P01  23 LPPGFRFHPSDFEIVSFYLTNKVLNTRFTC-TAITEADLNKIEPWDLPSKAKMGEKEWYFFYQKDRKYPTGLRANRATEAGYWKATGKDKEV 113
                        79**************************99.88***************99999*************************************** PP

                NAM  93 lskkgel...vglkktLvfykgrapkgektdWvmheyrle 129
                        +++ + +   vg+kktLvfy+grap+g kt+Wvmheyrle
  GRMZM2G154182_P01 114 YNAAEGVavlVGMKKTLVFYRGRAPRGDKTNWVMHEYRLE 153
                        **83333455****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-5915195IPR003441NAC domain
PROSITE profilePS5100556.79423195IPR003441NAC domain
PfamPF023651.0E-2624152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAADQQPQLQ EEMNDAAGGG LRLPPGFRFH PSDFEIVSFY LTNKVLNTRF TCTAITEADL  60
NKIEPWDLPS KAKMGEKEWY FFYQKDRKYP TGLRANRATE AGYWKATGKD KEVYNAAEGV  120
AVLVGMKKTL VFYRGRAPRG DKTNWVMHEY RLEGSGRLPA GLASATGSAA ANAAAALKAS  180
AYKQDEWVVC RVFHKTTGIK KTTAAPAYQV AMAGAEMDQN QNNFPGIPFP MPMQFPMLPD  240
FSLDPVPPYY PNAAGAGMSM LPMAAGIGGG AGGFQLNGAA LFGNPMAAPQ PMSFYHQMGA  300
AGTACAGGFD VSAPESRPSS MVSQKDDQAN GAEISSMMSV AGPGPATTTT IEMDGVWKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-482120115171NO APICAL MERISTEM PROTEIN
1ut4_B2e-482120115171NO APICAL MERISTEM PROTEIN
1ut7_A2e-482120115171NO APICAL MERISTEM PROTEIN
1ut7_B2e-482120115171NO APICAL MERISTEM PROTEIN
3swm_A2e-482120118174NAC domain-containing protein 19
3swm_B2e-482120118174NAC domain-containing protein 19
3swm_C2e-482120118174NAC domain-containing protein 19
3swm_D2e-482120118174NAC domain-containing protein 19
3swp_A2e-482120118174NAC domain-containing protein 19
3swp_B2e-482120118174NAC domain-containing protein 19
3swp_C2e-482120118174NAC domain-containing protein 19
3swp_D2e-482120118174NAC domain-containing protein 19
4dul_A2e-482120115171NAC domain-containing protein 19
4dul_B2e-482120115171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.59140.0embryo| endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G154182
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G154182_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0164300.0BT016430.1 Zea mays clone Contig263 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295428.10.0NAC domain-containing protein 100
RefseqXP_008655529.20.0NAC domain-containing protein 100 isoform X1
SwissprotQ9FK442e-75NAC87_ARATH; NAC domain-containing protein 87
TrEMBLC0HFK10.0C0HFK1_MAIZE; Uncharacterized protein
TrEMBLK0DF680.0K0DF68_MAIZE; NAC130 NAC type transcription factor (Fragment)
STRINGGRMZM2G154182_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-77Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Zimmermann R,Werr W
    Pattern formation in the monocot embryo as revealed by NAM and CUC3 orthologues from Zea mays L.
    Plant Mol. Biol., 2005. 58(5): p. 669-85
    [PMID:16158242]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]