PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G154029_P01 | ||||||||
Common Name | LOC103639011, ZEAMMB73_011508, Zm.4460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 316aa MW: 33729.3 Da PI: 4.7815 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.6 | 6.2e-05 | 265 | 304 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rrRR+ri + + Lr ++P ++ + ++L +A+ Y+++L GRMZM2G154029_P01 265 RRRRERIQETVAALRNIVPGG---TA--KDATAVLDEAICYLQYL 304 9******************96...33..344589********999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.537 | 255 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-7 | 265 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.2E-8 | 265 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MGDKVNPWCH WPNPQWKFNT ESSAGNLHPP DVGLANADSV ALPAYHLNAA PMPFFAASSI 60 AERPLPMGPR HVTTLAPSFE SPAPCPSRKR PSVLYQKETH GPTAAPLRRS KGPLDPVPEL 120 QGSNETNVTD VGAEETEGVH ENTDEIDALL DSSDSDEGPH ELDRARRQPA AENETSSVES 180 VASAAGSAPP AKKRRLSSCT DRSVVDTASS ARPDHSVEQK PLASDCDAQS CCVGEVVESG 240 RLRFSPGEGE GEVEAAEGDS PDDQRRRRER IQETVAALRN IVPGGTAKDA TAVLDEAICY 300 LQYLKLKVKT LGAASL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.76018 | 0.0 | cell culture| endosperm| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G154029 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G154029_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT083911 | 0.0 | BT083911.2 Zea mays full-length cDNA clone ZM_BFb0053N21 mRNA, complete cds. | |||
GenBank | BT085400 | 0.0 | BT085400.2 Zea mays full-length cDNA clone ZM_BFc0007H24 mRNA, complete cds. | |||
GenBank | BT086036 | 0.0 | BT086036.2 Zea mays full-length cDNA clone ZM_BFc0102K12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001316021.1 | 0.0 | transcription factor BPE-like | ||||
Refseq | XP_008660011.1 | 0.0 | transcription factor BPE-like isoform X1 | ||||
TrEMBL | K7VCX1 | 0.0 | K7VCX1_MAIZE; Putative HLH DNA-binding domain superfamily protein isoform 1 | ||||
STRING | GRMZM2G154029_P03 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10031 | 18 | 20 | Representative plant | OGRP12765 | 3 | 4 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G154029_P01 |
Entrez Gene | 103639011 |
Publications ? help Back to Top | |||
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