PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G153454_P02 | ||||||||
Common Name | bHLH90, LOC100282357 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 374aa MW: 39945.4 Da PI: 6.9369 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.1 | 6.5e-13 | 304 | 349 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + +++L +Av+YIk+Lq GRMZM2G153454_P02 304 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 349 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.945 | 298 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-16 | 301 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.55E-13 | 302 | 353 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.5E-16 | 303 | 369 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.4E-13 | 304 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.7E-10 | 304 | 349 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MYGSPVSKDL NLPVQPPMAS SGLLRYRSAP STVLGDLCED FLSSAPRAAS PDAGADNVFS 60 RFLADHHIRD DKPSPLASAA VHFPTETDTA SQQQQQQMMF HSQQQQEMVS AKSGLYRTVN 120 SGVETAAAAG AGGASSSDNA SNLIRQSSSP AGFLDHLNME NGYGAMLRAG MATADSLAGG 180 GSRLKGQLSF SSRQGSLMSQ ISEMDSEEVG GSSPEASGGG GRGYIPGYPM GSGWEDSSAL 240 LSDNLSGVKR PRDSSEPGQS GLTHQFSVPK TSSEMATIEK FLQFQDAVPC KIRAKRGCAT 300 HPRSIAERVR RTKISERIRK LQELVPNMDK QTNTSDMLDL AVDYIKDLQK QVKVLKESQD 360 NCTCSASKNQ QHSC |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.64797 | 0.0 | ear| endosperm| meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G153454 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00646 | PBM | Transfer from LOC_Os08g39630 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G153454_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU960591 | 0.0 | EU960591.1 Zea mays clone 226472 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001148741.1 | 0.0 | uncharacterized protein LOC100282357 | ||||
Refseq | NP_001344630.1 | 0.0 | uncharacterized protein LOC100282357 | ||||
TrEMBL | B6T6H6 | 0.0 | B6T6H6_MAIZE; BHLH transcription factor | ||||
STRING | GRMZM2G153454_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 4e-65 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G153454_P02 |
Entrez Gene | 100282357 |
Publications ? help Back to Top | |||
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