PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G153333_P01
Common NameLOC103630377
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 561aa    MW: 62826.6 Da    PI: 4.6747
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G153333_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.95.8e-1261925612374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        ++lL++cAea+s+++  +aq+++a+l++ ++ +gdp qRlaay++e+Laa+l++s++++y+al+++e++   +  +l+a+++++e++P++++
  GRMZM2G153333_P01 192 KQLLFDCAEAISENSIDEAQSIIAELRQKVAIQGDPSQRLAAYLVEGLAATLQSSGKGIYRALRCKEAP---TLYQLSAMQILFEICPCFRL 280
                        589*****************************************************************9...89999*************** PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                        ++++aN aIlea +ge+ vHiiDfdi+qG Q+++L+q L + +++p  lRiTgv++pes+      l+ +g+rL+k+Ae ++v+fef++ va
  GRMZM2G153333_P01 281 GFMAANYAILEACKGEDVVHIIDFDINQGSQYITLIQFLKNNSNKPRLLRITGVDDPESVhrAVGGLNVVGQRLEKLAEDCEVRFEFRA-VA 371
                        **********************************************************99888899***********************.79 PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                         ++edl+  +L  +pgEal+Vn+++ lh+l+desvs+ ++rd++L++vk+l+Pk+v++veq+a++n+++F  rf e  +yysalfdsl+a+l
  GRMZM2G153333_P01 372 ANIEDLTAGMLGRRPGEALIVNFAFLLHHLPDESVSIMNQRDRLLRMVKGLRPKLVTLVEQDANTNTTPFPSRFREVYDYYSALFDSLDATL 463
                        9******************************************************************************************* PP

               GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                        pres +r++vEr++l+reivn++aceg +r+er e ++kWr+r+ +aGF p p+++ a++ +++ll+ + +  yr e+ ++ l +gW d++L
  GRMZM2G153333_P01 464 PRESPDRMNVERQCLAREIVNILACEGPDRVERYEVAGKWRARMAMAGFVPSPFNSGAVDGIRSLLKSYCD-KYRFEKVQDGLHFGWGDKTL 554
                        *********************************************************************95.5******************* PP

               GRAS 368 vsvSaWr 374
                        v+ SaW+
  GRMZM2G153333_P01 555 VFSSAWQ 561
                        ******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.409165542IPR005202Transcription factor GRAS
PfamPF035142.0E-123192561IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MSFVRQADPS ASCAETTYIH KFVPPGSVFP AQRFVSGTDL LHHGPQPYNA EGYKQSGFNG  60
TAPHAFQSFY NTDSYAESHF NEAPYSPAIF DISQQNSQSL SDNQASDLVE FDEDEMRVKL  120
QELEHALLDD GDEIFFDLSG SINDEWNDNI KTNNEWVNTM KNIVSPDSPK EASPESSICC  180
LDNNVGEARN PKQLLFDCAE AISENSIDEA QSIIAELRQK VAIQGDPSQR LAAYLVEGLA  240
ATLQSSGKGI YRALRCKEAP TLYQLSAMQI LFEICPCFRL GFMAANYAIL EACKGEDVVH  300
IIDFDINQGS QYITLIQFLK NNSNKPRLLR ITGVDDPESV HRAVGGLNVV GQRLEKLAED  360
CEVRFEFRAV AANIEDLTAG MLGRRPGEAL IVNFAFLLHH LPDESVSIMN QRDRLLRMVK  420
GLRPKLVTLV EQDANTNTTP FPSRFREVYD YYSALFDSLD ATLPRESPDR MNVERQCLAR  480
EIVNILACEG PDRVERYEVA GKWRARMAMA GFVPSPFNSG AVDGIRSLLK SYCDKYRFEK  540
VQDGLHFGWG DKTLVFSSAW Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5519856026378Protein SCARECROW
5b3h_A3e-5519856025377Protein SCARECROW
5b3h_D3e-5519856025377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.671711e-158aerial organ| ear| endosperm| meristem| ovary| pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G153333
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G153333_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9485340.0EU948534.1 Zea mays clone 379741 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649657.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A1D6M4M40.0A0A1D6M4M4_MAIZE; Uncharacterized protein
STRINGGRMZM2G153333_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Representative plantOGRP82621116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]