PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G153233_P02
Common NameARF2
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 370aa    MW: 40897.9 Da    PI: 8.3234
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G153233_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.23.7e-24115216199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   
  GRMZM2G153233_P02 115 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL-- 202
                        89****************************996555555..8999*********************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        +++ +el+v+++r 
  GRMZM2G153233_P02 203 RTEHGELCVGIRRV 216
                        559999*****985 PP
2Auxin_resp120.81.1e-39271354183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                        aa+ a+++++FevvY+Prast+eFvvk+++v++a+++++++GmRfkmafetedss++++ +Gt+++ + +dp+rWpnS+Wr+L+
  GRMZM2G153233_P02 271 AASLAASGQPFEVVYYPRASTPEFVVKAASVQNAMRNQWCPGMRFKMAFETEDSSRISWfMGTIASAQVADPIRWPNSPWRLLQ 354
                        688999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-36106218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-29111220IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-21114215No hitNo description
PROSITE profilePS5086312.746115217IPR003340B3 DNA binding domain
SMARTSM010191.1E-21115217IPR003340B3 DNA binding domain
PfamPF023622.9E-22115216IPR003340B3 DNA binding domain
PfamPF065071.7E-34271354IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MKEVAEERCL DPQLWHACAG GMVQMPPVRS RVYYFPQGHA EHAHGGGAAD LAGARALPSL  60
VLCSVTGVRF LADPETDEVF AKIRLVPVAP GEVEFREPDE FSVDPADARE KLSSFAKTLT  120
QSDANNGGGF SVPRYCAETI FPKLDYRADP PVQTVLAKDV HGEVWKFRHI YRGTPRRHLL  180
TTGWSTFVNQ KKLVAGDSIV FLRTEHGELC VGIRRVKRVS CGGMECMSGW NAPGYGALSA  240
FLKDEEGKMM KSHGGYMRGR GKVKITDVVN AASLAASGQP FEVVYYPRAS TPEFVVKAAS  300
VQNAMRNQWC PGMRFKMAFE TEDSSRISWF MGTIASAQVA DPIRWPNSPW RLLQVLLDHM  360
FPILVCNTAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-761035851371Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.263450.0embryo| endosperm| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G153233
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G153233_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0045170.0HM004517.1 Zea mays auxin response factor 2 (ARF2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023155799.10.0auxin response factor 2 isoform X1
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLA0A317Y1S20.0A0A317Y1S2_MAIZE; Auxin response factor
TrEMBLC0HDR10.0C0HDR1_MAIZE; Auxin response factor
TrEMBLK0DCR00.0K0DCR0_MAIZE; Auxin response factor (Fragment)
STRINGGRMZM2G153233_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-154auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]