PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G152862_P02 | ||||||||
Common Name | ZEAMMB73_932858 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 124aa MW: 14062.4 Da PI: 10.7154 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.7 | 1.4e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRr+g+ KKA E+ vLCdaev v+ifss gkly+y+s GRMZM2G152862_P02 9 KRIENSTNRQVTFSKRRAGLVKKAREIGVLCDAEVGVVIFSSGGKLYDYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 22.7 | 4.2e-09 | 71 | 106 | 1 | 36 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqR 36 yq++sgk l+ +k+++l+ e++++kke++n+q ++R GRMZM2G152862_P02 71 YQTNSGKILWGEKHKNLSAEIDRVKKENDNMQIQLR 106 89999999************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.8E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.043 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.04E-41 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-33 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MGRGKIEIKR IENSTNRQVT FSKRRAGLVK KAREIGVLCD AEVGVVIFSS GGKLYDYCSP 60 RTSLSRILEK YQTNSGKILW GEKHKNLSAE IDRVKKENDN MQIQLRPVFL IQICSRSLAA 120 RALH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-20 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-20 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-20 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-20 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6byy_A | 3e-20 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 3e-20 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 3e-20 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 3e-20 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 3e-20 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 3e-20 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 3e-20 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 3e-20 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6c9l_A | 2e-20 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-20 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-20 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-20 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-20 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-20 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.336 | 1e-173 | ear| endosperm| ovary| pedicel| pericarp| pollen| shoot| silk |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G152862 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in lodicules and stamens from early to late stage of flower development. {ECO:0000269|PubMed:10945340, ECO:0000269|Ref.1}. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in anthers and carpels. Expressed in pollen, tapetum and stigma. {ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G152862_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT064585 | 0.0 | BT064585.1 Zea mays full-length cDNA clone ZM_BFc0186B22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105137.1 | 8e-72 | MADS29 | ||||
Refseq | XP_020397915.1 | 5e-72 | MADS29 isoform X1 | ||||
Swissprot | Q40702 | 9e-67 | MADS2_ORYSJ; MADS-box transcription factor 2 | ||||
TrEMBL | C0P8G6 | 6e-86 | C0P8G6_MAIZE; MADS29 | ||||
STRING | GRMZM2G152862_P01 | 4e-71 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 2e-49 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G152862_P02 |
Publications ? help Back to Top | |||
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