PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G152172_P01 | ||||||||
Common Name | LOC100381940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | BES1 | ||||||||
Protein Properties | Length: 378aa MW: 38904.5 Da PI: 7.5381 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 161.3 | 6.2e-50 | 23 | 99 | 2 | 78 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskplee 78 g+ r ptw+ErEnn+rRERrRRaia+ki++GLRa+Gny+l+ ++Dnn+VlkALc+eAGw+ve+DGttyrkg+kp+ + GRMZM2G152172_P01 23 GTPRVPTWRERENNRRRERRRRAIASKIFTGLRAHGNYALRRHCDNNDVLKALCEEAGWTVEPDGTTYRKGCKPPGS 99 6789**********************************************************************943 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 8.2E-48 | 24 | 119 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 378 aa Download sequence Send to blast |
MNGGEGEGGG AGSGAAAGGA GAGTPRVPTW RERENNRRRE RRRRAIASKI FTGLRAHGNY 60 ALRRHCDNND VLKALCEEAG WTVEPDGTTY RKGCKPPGSR DPYTAAFIPG GMVSCPVSPR 120 AYNGLSYPSS PSHVGGRGSS FFYGGAGSSR GVVIGGGVGG LPWLNNLSRY SDDASYADDY 180 SFSAPVTPQN GSPPRRKMAR WASGNAAAGS NVQSPWAASP GPSRYASLPV TMPHTPVHGE 240 AVAADPVSLL TGLQISAAAA NKPPAYSMFD FDAGSYSSRP GQSSDGAAWA AASSRGAAGD 300 GDAQVAPHGF SFGWSGGPAF SAWEGEKASV AFNAWEGEKA SGAFSAWEGE KVSDEYVDEG 360 DLELTLGNSR AGAGADRA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 2e-21 | 26 | 96 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 2e-21 | 26 | 96 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 2e-21 | 26 | 96 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 2e-21 | 26 | 96 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G152172 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G152172_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT062668 | 0.0 | BT062668.1 Zea mays full-length cDNA clone ZM_BFb0330H18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001168185.1 | 0.0 | uncharacterized protein LOC100381940 | ||||
TrEMBL | C0P2Z9 | 0.0 | C0P2Z9_MAIZE; BES1/BZR family protein BES1/BZR9 | ||||
STRING | GRMZM2G152172_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP57897 | 2 | 2 | Representative plant | OGRP19542 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36780.1 | 2e-24 | BES1/BZR1 homolog 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G152172_P01 |
Entrez Gene | 100381940 |