PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G151689_P02 | ||||||||
Common Name | LOC100284355, ZEAMMB73_769323 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C3H | ||||||||
Protein Properties | Length: 234aa MW: 24389.9 Da PI: 9.6719 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.9 | 3.5e-08 | 32 | 57 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck G++C+FaHg+ GRMZM2G151689_P02 32 KTRLCNKYNTAEGCKWGSKCHFAHGE 57 9***********************96 PP | |||||||
2 | zf-CCCH | 37 | 5.6e-12 | 200 | 225 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +f + G C +GdrC+FaHg+ GRMZM2G151689_P02 200 FKTKLCENFNK-GSCTFGDRCHFAHGE 225 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-14 | 26 | 62 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.812 | 30 | 58 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-8 | 30 | 61 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.21 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-5 | 32 | 57 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 5.84E-14 | 97 | 171 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 2.4E-9 | 101 | 171 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.32 | 102 | 166 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.1E-14 | 102 | 170 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.81E-12 | 104 | 166 | No hit | No description |
Pfam | PF00013 | 5.0E-10 | 104 | 167 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF90229 | 3.4E-9 | 198 | 230 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-17 | 198 | 231 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.131 | 199 | 226 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-7 | 199 | 225 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 200 | 225 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MTNLGGPPVP APPGRMPMGP GGPDGPPSPA LKTRLCNKYN TAEGCKWGSK CHFAHGEREL 60 GKPLQMDNSM GAPPMGPGPN GHFMPPPMPI PDMVPHSTFG ASATAKISVD ASLAGAIIGK 120 SGINTKHISR VTGAKLAIRD NEADPNHKNI ELEGTFDQIK HASAMVTELI VRISGKVPPQ 180 AKNNPGRGPG SHAGGPASNF KTKLCENFNK GSCTFGDRCH FAHGESELRK PAAA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.73728 | 0.0 | ear| embryo| endosperm| meristem| ovary| root| shoot| silk| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G151689 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G151689_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063537 | 0.0 | BT063537.1 Zea mays full-length cDNA clone ZM_BFc0074M08 mRNA, complete cds. | |||
GenBank | BT063925 | 0.0 | BT063925.1 Zea mays full-length cDNA clone ZM_BFc0120K02 mRNA, complete cds. | |||
GenBank | BT087874 | 0.0 | BT087874.1 Zea mays full-length cDNA clone ZM_BFb0279J08 mRNA, complete cds. | |||
GenBank | EU952598 | 0.0 | EU952598.1 Zea mays clone 1284141 mRNA sequence. | |||
GenBank | EU968008 | 0.0 | EU968008.1 Zea mays clone 312808 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001150722.1 | 1e-170 | zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
Swissprot | Q69XQ3 | 1e-126 | C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | C0P5G8 | 1e-169 | C0P5G8_MAIZE; Zinc finger CCCH domain-containing protein 52 | ||||
TrEMBL | C0P6K6 | 1e-169 | C0P6K6_MAIZE; Zinc finger CCCH domain-containing protein 52 | ||||
TrEMBL | K0DG49 | 1e-169 | K0DG49_MAIZE; C3H18 C3H type transcription factor (Fragment) | ||||
STRING | GRMZM2G151689_P01 | 1e-169 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 3e-52 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G151689_P02 |