PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G151689_P01
Common NameLOC100284355, ZEAMMB73_769323
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 340aa    MW: 36287.9 Da    PI: 8.9765
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G151689_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.25.7e-08138163227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        kt+lC+ +     Ck G++C+FaHg+
  GRMZM2G151689_P01 138 KTRLCNKYNTAEGCKWGSKCHFAHGE 163
                        9***********************96 PP
2zf-CCCH36.39.1e-12306331127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +kt+lC +f + G C +GdrC+FaHg+
  GRMZM2G151689_P01 306 FKTKLCENFNK-GSCTFGDRCHFAHGE 331
                        69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.086998IPR000571Zinc finger, CCCH-type
SMARTSM003565.47697IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-14132168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.812136164IPR000571Zinc finger, CCCH-type
SMARTSM003560.21136163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-8136167IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-5138163IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.36E-13204277IPR004088K Homology domain, type 1
SMARTSM003222.4E-9207277IPR004087K Homology domain
PROSITE profilePS5008414.32208272IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.2E-14208276IPR004088K Homology domain, type 1
PfamPF000139.6E-10210273IPR004088K Homology domain, type 1
CDDcd001056.30E-12210272No hitNo description
SuperFamilySSF902295.89E-9304336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-17304337IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7305331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.131305332IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9306331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MYPIFIKHDL YKIGSNHLLQ SLCIHCTYIF SSHLVRLHYP AACNIISSIN IFLHVYRLIS  60
VCRLSDIFAC SVAYIMLSIC STAGCPFGSN CHFLHNFPGG YLAVSKMTNL GGPPVPAPPG  120
RMPMGPGGPD GPPSPALKTR LCNKYNTAEG CKWGSKCHFA HGERELGKPL QMDNSMGAPP  180
MGPGPNGHFM PPPMPIPDMV PHSTFGASAT AKISVDASLA GAIIGKSGIN TKHISRVTGA  240
KLAIRDNEAD PNHKNIELEG TFDQIKHASA MVTELIVRIS GKVPPQAKNN PGRGPGSHAG  300
GPASNFKTKL CENFNKGSCT FGDRCHFAHG ESELRKPAAA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.737280.0ear| embryo| endosperm| meristem| ovary| root| shoot| silk| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G151689
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G151689_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0635370.0BT063537.1 Zea mays full-length cDNA clone ZM_BFc0074M08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150722.10.0zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ69XQ31e-144C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLC0P5G80.0C0P5G8_MAIZE; Zinc finger CCCH domain-containing protein 52
TrEMBLK0DG490.0K0DG49_MAIZE; C3H18 C3H type transcription factor (Fragment)
STRINGGRMZM2G151689_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-49C3H family protein