PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G151542_P01
Common NameLOC100193610, ZEAMMB73_780836
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 303aa    MW: 31768.9 Da    PI: 4.4123
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G151542_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.3e-2091141155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAa+ ++aa+ +l+g
  GRMZM2G151542_P01  91 TKFRGVRRRP-WGKFAAEIRDpW-----RgVRVWLGTFDTAEEAARVYDAAAVQLRG 141
                        69********.**********88.....55*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.25E-2891151No hitNo description
PfamPF008474.3E-1291141IPR001471AP2/ERF domain
SMARTSM003807.6E-3392155IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2292150IPR016177DNA-binding domain
PROSITE profilePS5103223.19692149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-2992150IPR001471AP2/ERF domain
PRINTSPR003672.4E-1093104IPR001471AP2/ERF domain
PRINTSPR003672.4E-10115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSRSRTVRIF WDDPDLTDSS GDDEGCGARR VGRMVRELAP APAPAPAALP VPDQCNPGDG  60
DRGRKAGVAG PGVCSGARRR LAKGAGGAAS TKFRGVRRRP WGKFAAEIRD PWRGVRVWLG  120
TFDTAEEAAR VYDAAAVQLR GANATTNFSA SAATNCGSGS GAGAGQDPAT TPAAGYESGA  180
ESSPTSVLRK VPSLSSLAED DSDAPAAQRR SLAVLEEEEL GEFVPFEDAP VYATSGFWDF  240
EPDAGFLYAE PSSPEASWNA AAAVAEPASS DDAPSWAASP VQENDYFQDL RDLFPLNRLP  300
AIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2187159980Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.346510.0meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G151542
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G151542_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0359230.0BT035923.1 Zea mays full-length cDNA clone ZM_BFb0088F17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132184.10.0uncharacterized protein LOC100193610
TrEMBLB4FFN50.0B4FFN5_MAIZE; Ethylene-responsive transcription factor CRF4
STRINGGRMZM2G151542_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.13e-14ethylene responsive element binding factor 3