PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G151444_P01 | ||||||||
Common Name | LOC100194371, WRKY45 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 293aa MW: 31182.8 Da PI: 9.8283 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.9 | 3.8e-32 | 215 | 273 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ GRMZM2G151444_P01 215 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 273 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-33 | 200 | 273 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-28 | 207 | 274 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.356 | 210 | 275 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.8E-37 | 215 | 274 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.2E-25 | 216 | 272 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901141 | Biological Process | regulation of lignin biosynthetic process | ||||
GO:1904369 | Biological Process | positive regulation of sclerenchyma cell differentiation | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MFPSPGRAVM ALGHGGQHMT ASSTAGGMAA SSSSTPTITF AFQQPSPPPP PTATSSLALA 60 HPHHHGVLGY GSACLLLDHH HPTTATSSAS PSHAAPSSVV PAPTLHHHFH GHAAGAPHVS 120 LSPPTRASPP PHHPWSTAAA CEEEPEPHHD HRQQAGQGGR PPRGKGAAVS EGSAAALGVG 180 AVRMKKAGGG GGGKARRKVR EPRFCFKTMS DVDVLDDGYK WRKYGQKVVK NTQHPRSYYR 240 CTQDNCRVKK RVERLAEDPR MVITTYEGRH VHSPSRDEDD DAARANAEMS FIW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-25 | 206 | 272 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-25 | 206 | 272 | 8 | 74 | Probable WRKY transcription factor 4 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.137116 | 0.0 | ear| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G151444 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G151444_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036900 | 0.0 | BT036900.1 Zea mays full-length cDNA clone ZM_BFb0146L21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001132878.1 | 0.0 | uncharacterized protein LOC100194371 | ||||
TrEMBL | B4FIG2 | 0.0 | B4FIG2_MAIZE; Putative WRKY transcription factor 13 | ||||
STRING | GRMZM2G151444_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1138 | 38 | 130 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 3e-47 | WRKY DNA-binding protein 13 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G151444_P01 |
Entrez Gene | 100194371 |