PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G151309_P01 | ||||||||
Common Name | LOC103635024, ZEAMMB73_877174, Zm.85415 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 437aa MW: 46209.5 Da PI: 9.2837 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.9 | 4e-06 | 74 | 96 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H GRMZM2G151309_P01 74 FVCEICGKGFQRDQNLQLHRRGH 96 89*******************88 PP | |||||||
2 | zf-C2H2 | 14.8 | 8e-05 | 151 | 173 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ GRMZM2G151309_P01 151 WKCDKCNKRYAVQSDWKAHAKTC 173 58******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.45E-7 | 73 | 96 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-5 | 74 | 96 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.614 | 74 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 74 | 96 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 76 | 96 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.3E-5 | 139 | 172 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.45E-7 | 146 | 171 | No hit | No description |
SMART | SM00355 | 110 | 151 | 171 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MASEAAAASV ISRNPCLFAP PLITNQQQPS HQEPQQEMPL PPPAKKKRNL PGTPDPAAEV 60 IALSPRTLLA TNRFVCEICG KGFQRDQNLQ LHRRGHNLPW KLRQRSAGKE PRKRVYVCPE 120 KTCVHHNPCR ALGDLTGIKK HFCRKHGEKK WKCDKCNKRY AVQSDWKAHA KTCGTREYRC 180 DCGTLFSRRD SFITHRAFCD ALAEETARQL NAAAAATSHL NNNAHVVVGL SLPSMVGHIN 240 GATGSILLPG APPQLYADLF APAPPQLSWP CELTSAAAAA SSSAAASGKQ KTDSVPSVFS 300 GYPHANLAVP GAGAADMSAT ALLQKAAQMG AVTSGSGSVI MTTTAGGHHQ PSDCGAGLLF 360 SALTQQNATN LISGSGTSTL TTSQLTATGG NMPYDVLSAV RHAGLKDAAV AVGREETRDF 420 LGVGVQALCS SSLNGWI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-34 | 147 | 208 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 2e-34 | 147 | 208 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G151309 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed throughout development. {ECO:0000269|PubMed:21265895}. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in vegetative organs and at lower levels in flowers and siliques. Expressed predominantly in roots. In roots, present in cortex, endodermis, and pericycle layer (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000305|PubMed:21265895}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G151309_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-178 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008655812.1 | 0.0 | zinc finger protein NUTCRACKER | ||||
Swissprot | Q9FFH3 | 1e-121 | IDD8_ARATH; Zinc finger protein NUTCRACKER | ||||
TrEMBL | K7URN2 | 0.0 | K7URN2_MAIZE; DNA binding protein, mRNA | ||||
STRING | GRMZM2G151309_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44160.1 | 1e-114 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G151309_P01 |
Entrez Gene | 103635024 |
Publications ? help Back to Top | |||
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